SLC45A2 — 635 ClinVar variants

All ClinVar germline SLC45A2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 236 flagged for review →

61 Pathogenic · 18 Pathogenic/Likely pathogenic · 34 Likely pathogenic · 46 Conflicting · 16 Benign · 5 Benign/Likely benign · 232 Likely benign · 223 Uncertain significance

Full SLC45A2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 236

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 6

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 23

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 152

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 152

Predictors split 55

The independent predictors disagree with each other — read with care.

All SLC45A2 variants

Pathogenic 61

Pathogenic/Likely pathogenic 18

  • c.1156+1G>C Multiple submitters SLC45A2-related disorder
  • p.Ala486Thr Multiple submitters oculocutaneous albinism type 4
  • p.Arg102Gln Multiple submitters oculocutaneous albinism type 4
  • p.Asn122Ser Multiple submitters SLC45A2-related disorder ⚠
  • p.Asp160His Multiple submitters SLC45A2-related disorder ⚠
  • p.Glu206fs Multiple submitters SLC45A2-related disorder
  • p.Gly491Arg Multiple submitters SLC45A2-related disorder
  • p.Gly89fs Multiple submitters SLC45A2-related disorder
  • p.His38Arg Multiple submitters SLC45A2-related disorder
  • p.Leu479fs Multiple submitters oculocutaneous albinism type 4
  • p.Lys389fs Multiple submitters SLC45A2-related disorder
  • p.Met1Thr Multiple submitters SLC45A2-related disorder
  • p.Phe338fs Multiple submitters oculocutaneous albinism type 4
  • p.Pro419Leu Multiple submitters SLC45A2-related disorder ⚠
  • p.Trp202Cys Multiple submitters Albinism or congenital nystagmus ⚠
  • p.Tyr266Ter Multiple submitters oculocutaneous albinism type 4
  • p.Tyr268fs Multiple submitters SLC45A2-related disorder
  • p.Tyr278Ter Multiple submitters SLC45A2-related disorder

Likely pathogenic 34

  • p.Cys519Arg Multiple submitters SLC45A2-related disorder
  • p.Glu368Lys Multiple submitters oculocutaneous albinism type 4 ⚠
  • p.Gly89Arg Multiple submitters oculocutaneous albinism type 4
  • p.Phe221del Multiple submitters SLC45A2-related disorder
  • c.385+1G>A Single submitter oculocutaneous albinism type 4
  • c.386-2A>G Single submitter oculocutaneous albinism type 4
  • c.562+2T>C Single submitter
  • p.Arg101His Single submitter oculocutaneous albinism type 4 ⚠
  • p.Asn292fs Single submitter oculocutaneous albinism type 4
  • p.Gln487Ter Single submitter SLC45A2-related disorder
  • p.Gly413Glu Single submitter oculocutaneous albinism type 4 ⚠
  • p.Gly493fs Single submitter SLC45A2-related disorder
  • p.Gly502Arg Single submitter ⚠
  • p.Leu114fs Single submitter oculocutaneous albinism type 4
  • p.Leu193Arg Single submitter oculocutaneous albinism type 4
  • p.Leu35Pro Single submitter
  • p.Leu61Phe Single submitter SKIN/HAIR/EYE PIGMENTATION 5, BLACK/NONBLACK HAIR
  • p.Met1Arg Single submitter
  • p.Met1Lys Single submitter
  • p.Met37Lys Single submitter SKIN/HAIR/EYE PIGMENTATION 5, BLACK/NONBLACK HAIR ⚠
  • p.Phe43Ser Single submitter oculocutaneous albinism type 4 ⚠
  • p.Phe525fs Single submitter
  • p.Pro255fs Single submitter SLC45A2-related disorder
  • p.Ser385Phe Single submitter SKIN/HAIR/EYE PIGMENTATION 5, BLACK/NONBLACK HAIR
  • p.Thr339Pro Single submitter SLC45A2-related disorder
  • p.Thr358fs Single submitter oculocutaneous albinism type 4
  • p.Trp372Ter Single submitter SLC45A2-related disorder
  • p.Trp99fs Single submitter SLC45A2-related disorder
  • p.Trp99Gly Single submitter SKIN/HAIR/EYE PIGMENTATION 5, BLACK/NONBLACK HAIR
  • p.Tyr394Ter Single submitter oculocutaneous albinism type 4
  • p.Val274fs Single submitter oculocutaneous albinism type 4
  • p.Val346Leu Single submitter oculocutaneous albinism type 4
  • p.Ala155_Phe158del No assertion criteria SLC45A2-related disorder
  • p.Ala50Glu No assertion criteria oculocutaneous albinism type 4

Conflicting classifications of pathogenicity 46

Benign 16

Benign/Likely benign 5

Likely benign 232

Uncertain significance 223