SLC4A11 — 1220 ClinVar variants

All ClinVar germline SLC4A11 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 157 flagged for review →

72 Pathogenic · 31 Pathogenic/Likely pathogenic · 70 Likely pathogenic · 56 Conflicting · 38 Benign · 6 Benign/Likely benign · 671 Likely benign · 276 Uncertain significance

Full SLC4A11 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 157

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 2

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors lean, ClinVar uncertain 121

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 18

The independent predictors disagree with each other — read with care.

All SLC4A11 variants

Pathogenic 72

Pathogenic/Likely pathogenic 31

  • c.1282+1G>A Multiple submitters congenital hereditary endothelial dystrophy of cornea
  • c.2192+1G>A Multiple submitters SLC4A11-related disorder
  • c.2389-1G>A Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.2558+1G>A Multiple submitters SLC4A11-related disorder
  • c.44-69del Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Arg145fs Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Arg286fs Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Arg43Ter Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Arg714fs Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Arg739Trp Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Arg853Cys Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Arg853His Multiple submitters corneal dystrophy, Fuchs endothelial, 4
  • p.Gln209Ter Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Gln285Ter Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Gln577Ter Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Glu127Ter Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Glu720Ter Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Gly397Arg Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Leu371fs Multiple submitters SLC4A11-related disorder
  • p.Leu827Pro Multiple submitters SLC4A11-related disorder
  • p.Met171fs Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Phe68fs Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Phe697fs Multiple submitters SLC4A11-related disorder
  • p.Pro18fs Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Pro757Leu Multiple submitters SLC4A11-related disorder
  • p.Ser197Leu Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Ser473Leu Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Thr306fs Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Tyr769fs Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Val192fs Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Val808Met Multiple submitters corneal dystrophy-perceptive deafness syndrome

Likely pathogenic 70

  • c.1168+1G>A Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.1490-2A>G Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.1849+1G>A Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.2018+1G>A Multiple submitters congenital hereditary endothelial dystrophy of cornea
  • c.2192+1del Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.2193-12_2201del Multiple submitters SLC4A11-related disorder
  • c.291+1G>T Multiple submitters corneal dystrophy, Fuchs endothelial, 4
  • c.730-2A>C Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Ala253Val Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Arg788His Multiple submitters corneal dystrophy, Fuchs endothelial, 4
  • p.Gly401Arg Multiple submitters congenital hereditary endothelial dystrophy of cornea
  • p.Leu532fs Multiple submitters SLC4A11-related disorder
  • p.Met840Val Multiple submitters corneal dystrophy, Fuchs endothelial, 4
  • p.Phe657del Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.1042+1G>A Single submitter
  • c.1042+1G>C Single submitter
  • c.1043-2A>G Single submitter
  • c.1169-2A>G Single submitter
  • c.1282+2T>G Single submitter corneal dystrophy-perceptive deafness syndrome
  • c.1283-1G>C Single submitter
  • c.1415+1G>T Single submitter
  • c.1416-1G>A Single submitter
  • c.1416-1G>C Single submitter corneal dystrophy-perceptive deafness syndrome
  • c.1742+1G>A Single submitter corneal dystrophy-perceptive deafness syndrome
  • c.1742+24_1757del Single submitter corneal dystrophy-perceptive deafness syndrome
  • c.1743-1G>A Single submitter
  • c.2192+2T>C Single submitter corneal dystrophy-perceptive deafness syndrome
  • c.2375_2388+18del Single submitter
  • c.2389-1_2389delinsTT Single submitter corneal dystrophy-perceptive deafness syndrome
  • c.241+1G>C Single submitter
  • c.2559-2A>G Single submitter congenital hereditary endothelial dystrophy of cornea
  • c.44-91A>G Single submitter corneal dystrophy-perceptive deafness syndrome
  • c.523+1G>C Single submitter
  • c.730-649_941del Single submitter
  • c.89-2A>G Single submitter
  • c.949-2A>C Single submitter
  • c.949-2A>T Single submitter
  • p.Ala264fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Ala420fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Ala717fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Arg220fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Arg859Ter Single submitter
  • p.Asn155fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Asp49fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Gln633Ter Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Gln761Ter Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Glu303fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Glu383Ter Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Glu41Ter Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Gly402Asp Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Gly693Glu Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Ile564fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Leu340fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Leu403fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Leu606fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Leu827del Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Phe26fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Phe454fs Single submitter SLC4A11-related disorder
  • p.Ser216Asn Single submitter
  • p.Ser752fs Single submitter
  • p.Thr418Ile Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Thr817Met Single submitter congenital hereditary endothelial dystrophy of cornea
  • p.Trp224Ser Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Trp446Ter Single submitter congenital hereditary endothelial dystrophy of cornea
  • p.Tyr31Ter Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Tyr367Ter Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Tyr622fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Tyr815fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Val519fs Single submitter corneal dystrophy-perceptive deafness syndrome
  • p.Val60fs Single submitter corneal dystrophy-perceptive deafness syndrome

Conflicting classifications of pathogenicity 56

Benign 38

  • c.1043-15A>C Multiple submitters corneal dystrophy
  • c.1043-19T>C Multiple submitters
  • c.1043-23TC[2] Multiple submitters
  • c.1283-11C>T Multiple submitters corneal dystrophy
  • c.1415+97T>G Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.1489+141T>C Multiple submitters congenital hereditary endothelial dystrophy of cornea
  • c.2193-18C>T Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.2193-4G>A Multiple submitters corneal dystrophy
  • c.2389-9C>T Multiple submitters corneal dystrophy
  • c.2558+17A>T Multiple submitters
  • c.292-86G>C Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.44-121G>C Multiple submitters corneal dystrophy
  • c.44-400C>G Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.729+140C>A Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.729+34G>A Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.730-29T>A Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.730-31T>C Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • c.89-8G>T Multiple submitters corneal dystrophy
  • c.-111T>C Multiple submitters congenital hereditary endothelial dystrophy of cornea
  • c.*34C>T Multiple submitters corneal dystrophy
  • p.Asn134Ser Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Asn537= Multiple submitters corneal dystrophy
  • p.Asp870= Multiple submitters corneal dystrophy-perceptive deafness syndrome
  • p.Ser197= Multiple submitters corneal dystrophy
  • p.Thr447= Multiple submitters corneal dystrophy
  • c.1043-9del Single submitter
  • c.1169-5dup Single submitter
  • c.2193-17G>A Single submitter
  • c.2559-5del Single submitter
  • c.291+126G>A Single submitter corneal dystrophy-perceptive deafness syndrome
  • c.44-8C>G Single submitter corneal dystrophy-perceptive deafness syndrome
  • c.523+16C>T Single submitter
  • c.730-29_730-28insC Single submitter corneal dystrophy-perceptive deafness syndrome
  • c.88+189G>A Single submitter corneal dystrophy-perceptive deafness syndrome
  • c.88+201A>C Single submitter corneal dystrophy-perceptive deafness syndrome
  • c.89-15C>T Single submitter
  • p.Ser553= Single submitter
  • c.44-329A>G No assertion criteria SLC4A11-related disorder

Benign/Likely benign 6

Likely benign 671

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 276