SMARCA5 — 134 ClinVar variants
All ClinVar germline SMARCA5 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 99 flagged for review →
3 Pathogenic · 6 Likely pathogenic · 2 Conflicting · 3 Benign · 1 Benign/Likely benign · 5 Likely benign · 114 Uncertain significance
Full SMARCA5 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 99
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
SMARCA5 p.Ala51Ser
Conflicting
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Ile796Val
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 87
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
SMARCA5 p.Lys694Glu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
SMARCA5 p.Met386Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
- SMARCA5 p.Ala109Val Uncertain significance Single submitter
-
SMARCA5 p.Ala44Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Ala48Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Ala49Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Ala51Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Ala54Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Ala589Val
Uncertain significance
Single submitter
SMARCA5-related disorder
-
SMARCA5 p.Ala5Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Arg1000Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Arg395Gln Uncertain significance Single submitter
- SMARCA5 p.Arg426Trp Uncertain significance Single submitter
-
SMARCA5 p.Arg592Gln
Uncertain significance
Single submitter
SMARCA5-related disorder
- SMARCA5 p.Arg736Gln Uncertain significance Single submitter
-
SMARCA5 p.Arg753Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Arg780Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Arg862Cys Uncertain significance Single submitter
-
SMARCA5 p.Asn163Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Asn331Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Asn567Ser
Uncertain significance
Single submitter
SMARCA5-related disorder
- SMARCA5 p.Asn946Thr Uncertain significance Single submitter
-
SMARCA5 p.Asp263Asn
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Asp530Asn Uncertain significance Single submitter
- SMARCA5 p.Asp530His Uncertain significance Single submitter
-
SMARCA5 p.Asp64Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Asp828Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Gln498Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Glu1022Gly Uncertain significance Single submitter
- SMARCA5 p.Glu422Asp Uncertain significance Single submitter
-
SMARCA5 p.Glu60Lys
Uncertain significance
Single submitter
neurodevelopmental disorder
- SMARCA5 p.Glu708Asp Uncertain significance Single submitter
- SMARCA5 p.Gly187Glu Uncertain significance Single submitter
- SMARCA5 p.Gly208Ser Uncertain significance Single submitter
- SMARCA5 p.His660Asn Uncertain significance Single submitter
-
SMARCA5 p.Ile725Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Ile881Met
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Ile881Thr Uncertain significance Single submitter
-
SMARCA5 p.Ile881Val
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Ile925Met Uncertain significance Single submitter
-
SMARCA5 p.Leu290Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Leu290Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Leu806Val
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Leu955Val Uncertain significance Single submitter
- SMARCA5 p.Lys1020Arg Uncertain significance Single submitter
-
SMARCA5 p.Lys1047Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Lys19Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Lys19Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Lys19Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Lys440Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Lys624Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Lys739Glu Uncertain significance Single submitter
- SMARCA5 p.Lys767Glu Uncertain significance Single submitter
-
SMARCA5 p.Lys834Glu
Uncertain significance
Single submitter
SMARCA5-associated neurodevelopmental disorder
-
SMARCA5 p.Met441Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Met441Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Met476Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Met476Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Met590Val
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Met901Thr Uncertain significance Single submitter
- SMARCA5 p.Phe714Leu Uncertain significance Single submitter
-
SMARCA5 p.Pro1041Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Pro122Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Pro125Leu Uncertain significance Single submitter
-
SMARCA5 p.Pro13Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Pro229Arg Uncertain significance Single submitter
-
SMARCA5 p.Pro277Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Pro37Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Pro460Ser Uncertain significance Single submitter
- SMARCA5 p.Pro493Ala Uncertain significance Single submitter
-
SMARCA5 p.Pro8Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Pro8Gln Uncertain significance Single submitter
-
SMARCA5 p.Pro9Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Ser295Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Ser32Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Ser437Leu
Uncertain significance
Single submitter
neurodevelopmental disorder
-
SMARCA5 p.Ser47Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Ser50Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Ser755Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Thr156Ala Uncertain significance Single submitter
- SMARCA5 p.Thr330Ala Uncertain significance Single submitter
-
SMARCA5 p.Thr551Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Trp302Cys
Uncertain significance
Single submitter
complex neurodevelopmental disorder
- SMARCA5 p.Trp581Arg Uncertain significance Single submitter
-
SMARCA5 p.Val40Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Arg620His
Uncertain significance
No assertion criteria
SMARCA5-related disorder
-
SMARCA5 p.Arg978Cys
Uncertain significance
No assertion criteria
SMARCA5-related disorder
Predictors split 10
The independent predictors disagree with each other — read with care.
- SMARCA5 p.Arg124Ser Uncertain significance Single submitter
-
SMARCA5 p.Arg764Leu
Uncertain significance
Single submitter
SMARCA5-related disorder
- SMARCA5 p.Asp675Gly Uncertain significance Single submitter
-
SMARCA5 p.Glu679Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCA5 p.Ile865Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCA5 p.Leu1004Ile Uncertain significance Single submitter
- SMARCA5 p.Leu587Ile Uncertain significance Single submitter
- SMARCA5 p.Met429Leu Uncertain significance Single submitter
- SMARCA5 p.Pro1030Ser Uncertain significance Single submitter
-
SMARCA5 p.Val414Leu
Uncertain significance
Single submitter
Inborn genetic diseases
All SMARCA5 variants
Pathogenic 3
- p.Glu893Lys Multiple submitters Hypotonia
- p.Ile434_Leu435del Multiple submitters Short stature
- p.Ser286fs Single submitter SMARCA5-related disorder
Likely pathogenic 6
- p.Pro339Ser Multiple submitters SMARCA5-associated neurodevelopmental disorder
- c.2283+1G>A Single submitter neurodevelopmental disorder
- p.Arg312Gly Single submitter intellectual disability
- p.Gly208Asp Single submitter neurodevelopmental disorder
- p.Pro339Ala Single submitter SMARCA5-associated neurodevelopmental disorder
- p.Lys314Gln No assertion criteria Short stature
Conflicting classifications of pathogenicity 2
- p.Ala51Ser Single submitter Inborn genetic diseases ⚠
- p.Ile796Val Single submitter Inborn genetic diseases ⚠
Benign/Likely benign 1
- p.Ser26= Multiple submitters
Likely benign 5
- p.Ala51= Multiple submitters
- c.2173-4C>T Single submitter
- c.3094-5T>C Single submitter
- p.Ala810= Single submitter
- p.Phe391= Single submitter
Uncertain significance 114
- p.Lys694Glu Multiple submitters Inborn genetic diseases ⚠
- p.Met386Thr Multiple submitters Inborn genetic diseases ⚠
- c.1159-8_1159-3del Single submitter
- c.621+4T>C Single submitter
- p.Ala109Val Single submitter ⚠
- p.Ala44Val Single submitter Inborn genetic diseases ⚠
- p.Ala48Gly Single submitter Inborn genetic diseases ⚠
- p.Ala49Val Single submitter Inborn genetic diseases ⚠
- p.Ala51Val Single submitter Inborn genetic diseases ⚠
- p.Ala54Val Single submitter Inborn genetic diseases ⚠
- p.Ala589Val Single submitter SMARCA5-related disorder ⚠
- p.Ala5Ser Single submitter Inborn genetic diseases ⚠
- p.Arg1000Lys Single submitter Inborn genetic diseases ⚠
- p.Arg124Ser Single submitter ⚠
- p.Arg186Gln Single submitter Inborn genetic diseases
- p.Arg395Gln Single submitter ⚠
- p.Arg426Trp Single submitter ⚠
- p.Arg592Gln Single submitter SMARCA5-related disorder ⚠
- p.Arg736Gln Single submitter ⚠
- p.Arg753Cys Single submitter Inborn genetic diseases ⚠
- p.Arg764Leu Single submitter SMARCA5-related disorder ⚠
- p.Arg780Leu Single submitter Inborn genetic diseases ⚠
- p.Arg862Cys Single submitter ⚠
- p.Arg974Ter Single submitter
- p.Arg978fs Single submitter
- p.Asn163Ser Single submitter Inborn genetic diseases ⚠
- p.Asn331Asp Single submitter Inborn genetic diseases ⚠
- p.Asn343del Single submitter SMARCA5-related disorder
- p.Asn567Ser Single submitter SMARCA5-related disorder ⚠
- p.Asn827Ile Single submitter Inborn genetic diseases
- p.Asn946Thr Single submitter ⚠
- p.Asp263Asn Single submitter Inborn genetic diseases ⚠
- p.Asp530Asn Single submitter ⚠
- p.Asp530His Single submitter ⚠
- p.Asp64Asn Single submitter Inborn genetic diseases ⚠
- p.Asp675Gly Single submitter ⚠
- p.Asp828Glu Single submitter Inborn genetic diseases ⚠
- p.Gln148Arg Single submitter Inborn genetic diseases
- p.Gln498Lys Single submitter Inborn genetic diseases ⚠
- p.Gln532His Single submitter
- p.Gln98Ter Single submitter
- p.Glu1022Gly Single submitter ⚠
- p.Glu169Gly Single submitter
- p.Glu422Asp Single submitter ⚠
- p.Glu60Lys Single submitter neurodevelopmental disorder ⚠
- p.Glu672del Single submitter
- p.Glu679Gly Single submitter Inborn genetic diseases ⚠
- p.Glu708Asp Single submitter ⚠
- p.Gly187Glu Single submitter ⚠
- p.Gly208Ser Single submitter ⚠
- p.His660Asn Single submitter ⚠
- p.Ile427Leu Single submitter Inborn genetic diseases
- p.Ile725Met Single submitter Inborn genetic diseases ⚠
- p.Ile865Thr Single submitter Inborn genetic diseases ⚠
- p.Ile881Met Single submitter Inborn genetic diseases ⚠
- p.Ile881Thr Single submitter ⚠
- p.Ile881Val Single submitter Inborn genetic diseases ⚠
- p.Ile925Met Single submitter ⚠
- p.Leu1004Ile Single submitter ⚠
- p.Leu290Ile Single submitter Inborn genetic diseases ⚠
- p.Leu290Val Single submitter Inborn genetic diseases ⚠
- p.Leu587Ile Single submitter ⚠
- p.Leu806Val Single submitter Inborn genetic diseases ⚠
- p.Leu955Val Single submitter ⚠
- p.Lys1020Arg Single submitter ⚠
- p.Lys1047Arg Single submitter Inborn genetic diseases ⚠
- p.Lys19Asn Single submitter Inborn genetic diseases ⚠
- p.Lys19Gln Single submitter Inborn genetic diseases ⚠
- p.Lys19Glu Single submitter Inborn genetic diseases ⚠
- p.Lys440Arg Single submitter Inborn genetic diseases ⚠
- p.Lys624Ile Single submitter Inborn genetic diseases ⚠
- p.Lys739Glu Single submitter ⚠
- p.Lys767Glu Single submitter ⚠
- p.Lys834Glu Single submitter SMARCA5-associated neurodevelopmental disorder ⚠
- p.Lys945Arg Single submitter Inborn genetic diseases
- p.Met1Ile Single submitter
- p.Met429Leu Single submitter ⚠
- p.Met441Leu Single submitter Inborn genetic diseases ⚠
- p.Met441Val Single submitter Inborn genetic diseases ⚠
- p.Met476Leu Single submitter Inborn genetic diseases ⚠
- p.Met476Thr Single submitter Inborn genetic diseases ⚠
- p.Met590Val Single submitter Inborn genetic diseases ⚠
- p.Met901Thr Single submitter ⚠
- p.Phe714Leu Single submitter ⚠
- p.Pro1030Ser Single submitter ⚠
- p.Pro1041Ser Single submitter Inborn genetic diseases ⚠
- p.Pro122Ala Single submitter Inborn genetic diseases ⚠
- p.Pro125Leu Single submitter ⚠
- p.Pro13Ser Single submitter Inborn genetic diseases ⚠
- p.Pro229Arg Single submitter ⚠
- p.Pro277Leu Single submitter Inborn genetic diseases ⚠
- p.Pro37Ser Single submitter Inborn genetic diseases ⚠
- p.Pro460Ser Single submitter ⚠
- p.Pro493Ala Single submitter ⚠
- p.Pro8Ala Single submitter Inborn genetic diseases ⚠
- p.Pro8Gln Single submitter ⚠
- p.Pro9Ala Single submitter Inborn genetic diseases ⚠
- p.Ser295Ala Single submitter Inborn genetic diseases ⚠
- p.Ser32Cys Single submitter Inborn genetic diseases ⚠
- p.Ser437Leu Single submitter neurodevelopmental disorder ⚠
- p.Ser47Cys Single submitter Inborn genetic diseases ⚠
- p.Ser50Arg Single submitter Inborn genetic diseases ⚠
- p.Ser710fs Single submitter
- p.Ser755Arg Single submitter Inborn genetic diseases ⚠
- p.Thr156Ala Single submitter ⚠
- p.Thr330Ala Single submitter ⚠
- p.Thr473Ser Single submitter Inborn genetic diseases
- p.Thr551Ala Single submitter Inborn genetic diseases ⚠
- p.Trp302Cys Single submitter complex neurodevelopmental disorder ⚠
- p.Trp581Arg Single submitter ⚠
- p.Val40Gly Single submitter Inborn genetic diseases ⚠
- p.Val414Leu Single submitter Inborn genetic diseases ⚠
- p.Arg620His No assertion criteria SMARCA5-related disorder ⚠
- p.Arg978Cys No assertion criteria SMARCA5-related disorder ⚠