SMARCD1 — 111 ClinVar variants
All ClinVar germline SMARCD1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 69 flagged for review →
7 Pathogenic · 2 Likely pathogenic · 1 Conflicting · 9 Benign · 1 Benign/Likely benign · 15 Likely benign · 76 Uncertain significance
Full SMARCD1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 69
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
Predictors lean, ClinVar uncertain 43
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
SMARCD1 p.Arg334Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
SMARCD1 p.Asp247Gly
Uncertain significance
Multiple submitters
Inborn genetic diseases
- SMARCD1 p.Ile184Val Uncertain significance Multiple submitters
-
SMARCD1 p.Ile323Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
SMARCD1 p.Thr189Ser
Uncertain significance
Multiple submitters
Coffin-Siris syndrome 11
-
SMARCD1 p.Ala104Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Ala115Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Ala146Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCD1 p.Ala418Gly Uncertain significance Single submitter
- SMARCD1 p.Arg100Cys Uncertain significance Single submitter
-
SMARCD1 p.Arg138His
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Arg174His
Uncertain significance
Single submitter
neurodevelopmental disorder
- SMARCD1 p.Arg214Trp Uncertain significance Single submitter
-
SMARCD1 p.Arg312His
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCD1 p.Arg438Trp Uncertain significance Single submitter
- SMARCD1 p.Asn122Ser Uncertain significance Single submitter
- SMARCD1 p.Asn253Asp Uncertain significance Single submitter
- SMARCD1 p.Asp268Asn Uncertain significance Single submitter
- SMARCD1 p.Asp298Tyr Uncertain significance Single submitter
- SMARCD1 p.Gln93Arg Uncertain significance Single submitter
-
SMARCD1 p.Glu474Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Gly80Ser
Uncertain significance
Single submitter
Coffin-Siris syndrome 11
- SMARCD1 p.Ile168Thr Uncertain significance Single submitter
-
SMARCD1 p.Ile186Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Ile428Val
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCD1 p.Leu255Val Uncertain significance Single submitter
-
SMARCD1 p.Leu297Ser
Uncertain significance
Single submitter
Coffin-Siris syndrome 11
-
SMARCD1 p.Lys238Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Met352Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Met76Val
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCD1 p.Pro275Ser Uncertain significance Single submitter
- SMARCD1 p.Pro313Ser Uncertain significance Single submitter
-
SMARCD1 p.Pro358Ser
Uncertain significance
Single submitter
Coffin-Siris syndrome 11
- SMARCD1 p.Pro74Thr Uncertain significance Single submitter
-
SMARCD1 p.Pro85Ser
Uncertain significance
Single submitter
Coffin-Siris syndrome 11
-
SMARCD1 p.Ser219Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Ser410Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Ser497Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Ser67Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Ser67Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Ser86Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCD1 p.Thr189Ile Uncertain significance Single submitter
- SMARCD1 p.Thr387Lys Uncertain significance Single submitter
Predictors split 25
The independent predictors disagree with each other — read with care.
-
SMARCD1 p.Thr203Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
SMARCD1 p.Ala487Gly
Uncertain significance
Single submitter
Coffin-Siris syndrome 11
- SMARCD1 p.Arg100Leu Uncertain significance Single submitter
- SMARCD1 p.Arg231Lys Uncertain significance Single submitter
- SMARCD1 p.Arg300Ser Uncertain significance Single submitter
-
SMARCD1 p.Asn432Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCD1 p.Gln159His Uncertain significance Single submitter
- SMARCD1 p.Gln344Arg Benign Single submitter
-
SMARCD1 p.Gln488Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Gln508Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Gly200Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.His326Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCD1 p.Ile373Val Uncertain significance Single submitter
-
SMARCD1 p.Leu434Met
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCD1 p.Lys223Asn Uncertain significance Single submitter
- SMARCD1 p.Met162Thr Uncertain significance Single submitter
- SMARCD1 p.Met352Ile Uncertain significance Single submitter
- SMARCD1 p.Pro293Ala Uncertain significance Single submitter
- SMARCD1 p.Pro473Ser Uncertain significance Single submitter
-
SMARCD1 p.Ser239Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
SMARCD1 p.Thr189Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- SMARCD1 p.Tyr496His Uncertain significance Single submitter
- SMARCD1 p.Val499Met Uncertain significance Single submitter
-
SMARCD1 p.Arg446Gly
Pathogenic
No assertion criteria
Coffin-Siris syndrome 11
-
SMARCD1 p.Phe495Leu
Pathogenic
No assertion criteria
Coffin-Siris syndrome 11
All SMARCD1 variants
Pathogenic 7
- p.Arg503Ter Single submitter Coffin-Siris syndrome 11
- p.Glu198Lys Single submitter
- p.Arg446Gly No assertion criteria Coffin-Siris syndrome 11 ⚠
- p.Arg478fs No assertion criteria Coffin-Siris syndrome 11
- p.Asp330Glu No assertion criteria Coffin-Siris syndrome 11
- p.Phe495Leu No assertion criteria Coffin-Siris syndrome 11 ⚠
- p.Trp486Ter No assertion criteria Coffin-Siris syndrome 11
Likely pathogenic 2
- p.Ile424Thr Single submitter Coffin-Siris syndrome 11
- p.Arg351Cys No assertion criteria alopecia, androgenetic, 1
Conflicting classifications of pathogenicity 1
- p.Arg165Gln Single submitter ⚠
Benign 9
- c.178-9C>T Multiple submitters Coffin-Siris syndrome 11
- c.366-119A>G Multiple submitters
- c.655-93T>C Multiple submitters
- c.874-11G>A Multiple submitters
- c.1269+192G>A Single submitter
- c.366-132_366-131insAGTGGTGGT Single submitter
- c.772-221G>C Single submitter
- c.772-36C>T Single submitter
- p.Gln344Arg Single submitter ⚠
Benign/Likely benign 1
- p.Gln112His Multiple submitters Coffin-Siris syndrome 11
Likely benign 15
- c.1036-4A>G Multiple submitters
- c.1134-18C>T Single submitter
- c.365+20GAGG[3] Single submitter
- c.655-267C>T Single submitter
- c.772-12del Single submitter
- p.Ala115= Single submitter
- p.Arg461Ser Single submitter Inborn genetic diseases
- p.Arg503= Single submitter
- p.Arg68Gln Single submitter Coffin-Siris syndrome 11
- p.Asn84Ser Single submitter Inborn genetic diseases
- p.Glu139= Single submitter
- p.Leu463= Single submitter
- p.Pro275= Single submitter
- p.Thr203= Single submitter
- p.Tyr482= Single submitter
Uncertain significance 76
- p.Ala302Gly Multiple submitters Inborn genetic diseases
- p.Arg334Gln Multiple submitters Inborn genetic diseases ⚠
- p.Asp247Gly Multiple submitters Inborn genetic diseases ⚠
- p.Ile184Val Multiple submitters ⚠
- p.Ile323Val Multiple submitters Inborn genetic diseases ⚠
- p.Thr189Ser Multiple submitters Coffin-Siris syndrome 11 ⚠
- p.Thr203Met Multiple submitters Inborn genetic diseases ⚠
- c.1393-1G>A Single submitter Coffin-Siris syndrome 11
- c.178-5T>G Single submitter
- p.Ala104Ser Single submitter Inborn genetic diseases ⚠
- p.Ala115Val Single submitter Inborn genetic diseases ⚠
- p.Ala146Thr Single submitter Inborn genetic diseases ⚠
- p.Ala152fs Single submitter
- p.Ala418Gly Single submitter ⚠
- p.Ala487Gly Single submitter Coffin-Siris syndrome 11 ⚠
- p.Arg100Cys Single submitter ⚠
- p.Arg100Leu Single submitter ⚠
- p.Arg119Ter Single submitter Coffin-Siris syndrome 11
- p.Arg138His Single submitter Inborn genetic diseases ⚠
- p.Arg174His Single submitter neurodevelopmental disorder ⚠
- p.Arg214Trp Single submitter ⚠
- p.Arg231Lys Single submitter ⚠
- p.Arg300Ser Single submitter ⚠
- p.Arg312His Single submitter Inborn genetic diseases ⚠
- p.Arg438Trp Single submitter ⚠
- p.Arg503del Single submitter Coffin-Siris syndrome 11
- p.Arg68Ter Single submitter
- p.Asn122Ser Single submitter ⚠
- p.Asn253Asp Single submitter ⚠
- p.Asn432Ser Single submitter Inborn genetic diseases ⚠
- p.Asp268Asn Single submitter ⚠
- p.Asp298Tyr Single submitter ⚠
- p.Gln159His Single submitter ⚠
- p.Gln488Arg Single submitter Inborn genetic diseases ⚠
- p.Gln508Arg Single submitter Inborn genetic diseases ⚠
- p.Gln93Arg Single submitter ⚠
- p.Glu474Ala Single submitter Inborn genetic diseases ⚠
- p.Glu489fs Single submitter Coffin-Siris syndrome 11
- p.Gly200Arg Single submitter Inborn genetic diseases ⚠
- p.Gly80Ser Single submitter Coffin-Siris syndrome 11 ⚠
- p.His326Arg Single submitter Inborn genetic diseases ⚠
- p.Ile168Thr Single submitter ⚠
- p.Ile186Thr Single submitter Inborn genetic diseases ⚠
- p.Ile373Val Single submitter ⚠
- p.Ile428Val Single submitter Inborn genetic diseases ⚠
- p.Leu151fs Single submitter
- p.Leu255Val Single submitter ⚠
- p.Leu297Ser Single submitter Coffin-Siris syndrome 11 ⚠
- p.Leu434Met Single submitter Inborn genetic diseases ⚠
- p.Lys223Asn Single submitter ⚠
- p.Lys238Met Single submitter Inborn genetic diseases ⚠
- p.Met162Thr Single submitter ⚠
- p.Met352Ile Single submitter ⚠
- p.Met352Val Single submitter Inborn genetic diseases ⚠
- p.Met76Val Single submitter Inborn genetic diseases ⚠
- p.Pro275Ser Single submitter ⚠
- p.Pro293Ala Single submitter ⚠
- p.Pro313Ser Single submitter ⚠
- p.Pro358Ser Single submitter Coffin-Siris syndrome 11 ⚠
- p.Pro473Ser Single submitter ⚠
- p.Pro74Thr Single submitter ⚠
- p.Pro85Ser Single submitter Coffin-Siris syndrome 11 ⚠
- p.Ser219Thr Single submitter Inborn genetic diseases ⚠
- p.Ser239Thr Single submitter Inborn genetic diseases ⚠
- p.Ser410Phe Single submitter Inborn genetic diseases ⚠
- p.Ser497Cys Single submitter Inborn genetic diseases ⚠
- p.Ser67Asn Single submitter Inborn genetic diseases ⚠
- p.Ser67Ile Single submitter Inborn genetic diseases ⚠
- p.Ser86Leu Single submitter Inborn genetic diseases ⚠
- p.Ter516Gln Single submitter
- p.Thr189Ala Single submitter Inborn genetic diseases ⚠
- p.Thr189Ile Single submitter ⚠
- p.Thr387Lys Single submitter ⚠
- p.Tyr496His Single submitter ⚠
- p.Val111_Gln113del Single submitter
- p.Val499Met Single submitter ⚠