SMARCE1 — 1139 ClinVar variants

All ClinVar germline SMARCE1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 536 flagged for review →

45 Pathogenic · 4 Pathogenic/Likely pathogenic · 27 Likely pathogenic · 106 Conflicting · 16 Benign · 13 Benign/Likely benign · 395 Likely benign · 533 Uncertain significance

Full SMARCE1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 536

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 79

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predicted LoF vs a conflicting call 1

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

Predictors lean, ClinVar uncertain 292

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 292

Predictors split 164

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 164

All SMARCE1 variants

Pathogenic 45

Pathogenic/Likely pathogenic 4

  • p.Arg105Gln Multiple submitters Coffin-Siris syndrome 5
  • p.Arg251Ter Multiple submitters hereditary neoplastic syndrome
  • p.Gly185fs Multiple submitters hereditary neoplastic syndrome
  • p.Tyr31fs Multiple submitters familial meningioma

Likely pathogenic 27

Conflicting classifications of pathogenicity 106

Benign 16

Benign/Likely benign 13

  • c.1028-18A>G Multiple submitters familial meningioma
  • c.369+10G>C Multiple submitters familial meningioma
  • c.369+12G>T Multiple submitters familial meningioma
  • p.Asn117= Multiple submitters hereditary neoplastic syndrome
  • p.Glu321= Multiple submitters familial meningioma
  • p.Glu411Ter Multiple submitters hereditary neoplastic syndrome
  • p.Gly360Asp Multiple submitters hereditary neoplastic syndrome
  • p.Lys298= Multiple submitters familial meningioma
  • p.Lys367= Multiple submitters hereditary neoplastic syndrome
  • p.Pro175= Multiple submitters familial meningioma
  • p.Ser389= Multiple submitters hereditary neoplastic syndrome
  • p.Thr193= Multiple submitters familial meningioma
  • p.Thr363= Multiple submitters familial meningioma

Likely benign 395

Showing the top 300 by review status; the full set is in the sitemap.

  • c.1027+20C>T Multiple submitters familial meningioma
  • c.156+15T>C Multiple submitters familial meningioma
  • c.156+191A>G Multiple submitters
  • c.157-4G>A Multiple submitters hereditary neoplastic syndrome
  • c.157-6T>C Multiple submitters familial meningioma
  • c.237+30G>A Multiple submitters
  • c.370-13A>G Multiple submitters familial meningioma
  • c.541+11A>G Multiple submitters familial meningioma
  • c.541+253C>T Multiple submitters
  • c.541+309A>G Multiple submitters
  • c.541+8A>G Multiple submitters familial meningioma
  • c.542-11G>A Multiple submitters familial meningioma
  • c.715-4G>A Multiple submitters hereditary neoplastic syndrome
  • p.Ala132= Multiple submitters hereditary neoplastic syndrome
  • p.Ala138= Multiple submitters hereditary neoplastic syndrome
  • p.Ala194= Multiple submitters hereditary neoplastic syndrome
  • p.Ala243= Multiple submitters hereditary neoplastic syndrome
  • p.Ala287= Multiple submitters hereditary neoplastic syndrome
  • p.Ala296= Multiple submitters hereditary neoplastic syndrome
  • p.Ala307= Multiple submitters familial meningioma
  • p.Ala311= Multiple submitters familial meningioma
  • p.Ala325= Multiple submitters hereditary neoplastic syndrome
  • p.Ala394= Multiple submitters familial meningioma
  • p.Ala53= Multiple submitters familial meningioma
  • p.Arg198= Multiple submitters hereditary neoplastic syndrome
  • p.Arg229= Multiple submitters hereditary neoplastic syndrome
  • p.Arg297= Multiple submitters hereditary neoplastic syndrome
  • p.Arg303= Multiple submitters hereditary neoplastic syndrome
  • p.Arg50= Multiple submitters hereditary neoplastic syndrome
  • p.Arg75= Multiple submitters hereditary neoplastic syndrome
  • p.Asn127= Multiple submitters hereditary neoplastic syndrome
  • p.Asn135= Multiple submitters familial meningioma
  • p.Asn199= Multiple submitters hereditary neoplastic syndrome
  • p.Asn268= Multiple submitters hereditary neoplastic syndrome
  • p.Asn356= Multiple submitters hereditary neoplastic syndrome
  • p.Asn386= Multiple submitters hereditary neoplastic syndrome
  • p.Asn44= Multiple submitters hereditary neoplastic syndrome
  • p.Asn88= Multiple submitters hereditary neoplastic syndrome
  • p.Asp178= Multiple submitters hereditary neoplastic syndrome
  • p.Asp183= Multiple submitters familial meningioma
  • p.Asp184= Multiple submitters familial meningioma
  • p.Asp214= Multiple submitters familial meningioma
  • p.Asp281= Multiple submitters hereditary neoplastic syndrome
  • p.Asp334= Multiple submitters familial meningioma
  • p.Asp335= Multiple submitters hereditary neoplastic syndrome
  • p.Asp375= Multiple submitters hereditary neoplastic syndrome
  • p.Asp384= Multiple submitters hereditary neoplastic syndrome
  • p.Cys274= Multiple submitters hereditary neoplastic syndrome
  • p.Gln159= Multiple submitters hereditary neoplastic syndrome
  • p.Gln161= Multiple submitters hereditary neoplastic syndrome
  • p.Gln174= Multiple submitters hereditary neoplastic syndrome
  • p.Gln247= Multiple submitters hereditary neoplastic syndrome
  • p.Gln315= Multiple submitters familial meningioma
  • p.Gln354= Multiple submitters familial meningioma
  • p.Gln355= Multiple submitters familial meningioma
  • p.Gln83= Multiple submitters hereditary neoplastic syndrome
  • p.Glu111= Multiple submitters hereditary neoplastic syndrome
  • p.Glu114= Multiple submitters hereditary neoplastic syndrome
  • p.Glu122= Multiple submitters hereditary neoplastic syndrome
  • p.Glu128= Multiple submitters hereditary neoplastic syndrome
  • p.Glu154= Multiple submitters hereditary neoplastic syndrome
  • p.Glu155= Multiple submitters hereditary neoplastic syndrome
  • p.Glu165= Multiple submitters hereditary neoplastic syndrome
  • p.Glu177= Multiple submitters hereditary neoplastic syndrome
  • p.Glu242= Multiple submitters hereditary neoplastic syndrome
  • p.Glu250= Multiple submitters hereditary neoplastic syndrome
  • p.Glu254= Multiple submitters hereditary neoplastic syndrome
  • p.Glu304= Multiple submitters hereditary neoplastic syndrome
  • p.Glu330= Multiple submitters familial meningioma
  • p.Glu358= Multiple submitters familial meningioma
  • p.Glu365= Multiple submitters familial meningioma
  • p.Glu397= Multiple submitters hereditary neoplastic syndrome
  • p.Glu95= Multiple submitters hereditary neoplastic syndrome
  • p.Gly167= Multiple submitters hereditary neoplastic syndrome
  • p.Gly185= Multiple submitters hereditary neoplastic syndrome
  • p.Gly360= Multiple submitters hereditary neoplastic syndrome
  • p.Gly370= Multiple submitters familial meningioma
  • p.Gly388= Multiple submitters familial meningioma
  • p.Gly46= Multiple submitters hereditary neoplastic syndrome
  • p.Gly56= Multiple submitters hereditary neoplastic syndrome
  • p.His190= Multiple submitters hereditary neoplastic syndrome
  • p.His200= Multiple submitters hereditary neoplastic syndrome
  • p.His252= Multiple submitters familial meningioma
  • p.Ile100= Multiple submitters hereditary neoplastic syndrome
  • p.Ile285= Multiple submitters familial meningioma
  • p.Ile289= Multiple submitters hereditary neoplastic syndrome
  • p.Leu116= Multiple submitters hereditary neoplastic syndrome
  • p.Leu202= Multiple submitters hereditary neoplastic syndrome
  • p.Leu207= Multiple submitters familial meningioma
  • p.Leu241= Multiple submitters familial meningioma
  • p.Leu273= Multiple submitters familial meningioma
  • p.Leu34= Multiple submitters familial meningioma
  • p.Leu347= Multiple submitters familial meningioma
  • p.Leu91= Multiple submitters hereditary neoplastic syndrome
  • p.Lys255= Multiple submitters familial meningioma
  • p.Lys258= Multiple submitters hereditary neoplastic syndrome
  • p.Lys277= Multiple submitters familial meningioma
  • p.Lys333= Multiple submitters hereditary neoplastic syndrome
  • p.Lys409= Multiple submitters familial meningioma
  • p.Lys68= Multiple submitters hereditary neoplastic syndrome
  • p.Pro137= Multiple submitters familial meningioma
  • p.Pro169= Multiple submitters familial meningioma
  • p.Pro23= Multiple submitters familial meningioma
  • p.Pro30= Multiple submitters hereditary neoplastic syndrome
  • p.Pro403= Multiple submitters familial meningioma
  • p.Pro45= Multiple submitters hereditary neoplastic syndrome
  • p.Pro69= Multiple submitters hereditary neoplastic syndrome
  • p.Pro89= Multiple submitters hereditary neoplastic syndrome
  • p.Ser172= Multiple submitters hereditary neoplastic syndrome
  • p.Ser187= Multiple submitters hereditary neoplastic syndrome
  • p.Ser208= Multiple submitters familial meningioma
  • p.Ser210= Multiple submitters hereditary neoplastic syndrome
  • p.Ser262= Multiple submitters hereditary neoplastic syndrome
  • p.Ser265= Multiple submitters familial meningioma
  • p.Ser314= Multiple submitters hereditary neoplastic syndrome
  • p.Ser32= Multiple submitters hereditary neoplastic syndrome
  • p.Ser353= Multiple submitters hereditary neoplastic syndrome
  • p.Ser391= Multiple submitters hereditary neoplastic syndrome
  • p.Ser393= Multiple submitters hereditary neoplastic syndrome
  • p.Ser49= Multiple submitters hereditary neoplastic syndrome
  • p.Ter412= Multiple submitters hereditary neoplastic syndrome
  • p.Thr108= Multiple submitters hereditary neoplastic syndrome
  • p.Thr263= Multiple submitters hereditary neoplastic syndrome
  • p.Thr350= Multiple submitters hereditary neoplastic syndrome
  • p.Thr361= Multiple submitters hereditary neoplastic syndrome
  • p.Thr382= Multiple submitters hereditary neoplastic syndrome
  • p.Thr395= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr119= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr170= Multiple submitters familial meningioma
  • p.Tyr182= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr28= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr76= Multiple submitters familial meningioma
  • p.Val212= Multiple submitters hereditary neoplastic syndrome
  • p.Val219= Multiple submitters hereditary neoplastic syndrome
  • c.1027+13C>G Single submitter familial meningioma
  • c.1027+15A>G Single submitter familial meningioma
  • c.1027+16C>A Single submitter familial meningioma
  • c.1027+16C>G Single submitter familial meningioma
  • c.1027+17A>G Single submitter familial meningioma
  • c.1027+19A>G Single submitter familial meningioma
  • c.1027+412A>G Single submitter
  • c.1027+47G>A Single submitter
  • c.1027+7C>G Single submitter familial meningioma
  • c.1027+8A>G Single submitter familial meningioma
  • c.1028-10G>T Single submitter familial meningioma
  • c.1028-12G>A Single submitter familial meningioma
  • c.1028-14A>C Single submitter familial meningioma
  • c.1028-20T>A Single submitter familial meningioma
  • c.1028-7A>G Single submitter familial meningioma
  • c.1028-7del Single submitter familial meningioma
  • c.156+10T>G Single submitter familial meningioma
  • c.156+13A>G Single submitter familial meningioma
  • c.156+16A>G Single submitter familial meningioma
  • c.156+17T>C Single submitter familial meningioma
  • c.156+20C>A Single submitter familial meningioma
  • c.156+20C>T Single submitter familial meningioma
  • c.156+20del Single submitter familial meningioma
  • c.156+27C>T Single submitter
  • c.156+9A>G Single submitter familial meningioma
  • c.157-11C>T Single submitter familial meningioma
  • c.157-11CT[3] Single submitter familial meningioma
  • c.157-12A>T Single submitter familial meningioma
  • c.157-13A>G Single submitter familial meningioma
  • c.157-19G>A Single submitter familial meningioma
  • c.157-20T>G Single submitter familial meningioma
  • c.157-3dup Single submitter hereditary neoplastic syndrome
  • c.157-4G>T Single submitter familial meningioma
  • c.157-6del Single submitter familial meningioma
  • c.237+14A>T Single submitter familial meningioma
  • c.237+200del Single submitter
  • c.237+8C>T Single submitter familial meningioma
  • c.237+9T>G Single submitter familial meningioma
  • c.238-11T>C Single submitter familial meningioma
  • c.238-14G>C Single submitter familial meningioma
  • c.238-16C>G Single submitter familial meningioma
  • c.238-18A>T Single submitter familial meningioma
  • c.238-19C>T Single submitter familial meningioma
  • c.238-327C>T Single submitter
  • c.238-3A>G Single submitter familial meningioma
  • c.238-6T>C Single submitter familial meningioma
  • c.238-7T>C Single submitter familial meningioma
  • c.369+10G>A Single submitter familial meningioma
  • c.369+13C>T Single submitter familial meningioma
  • c.369+15C>T Single submitter familial meningioma
  • c.369+17C>T Single submitter familial meningioma
  • c.369+18A>G Single submitter familial meningioma
  • c.369+18A>T Single submitter familial meningioma
  • c.369+7T>G Single submitter familial meningioma
  • c.369+8A>G Single submitter familial meningioma
  • c.369+9G>T Single submitter familial meningioma
  • c.370-12T>C Single submitter familial meningioma
  • c.370-14C>T Single submitter familial meningioma
  • c.370-14del Single submitter familial meningioma
  • c.370-15A>T Single submitter familial meningioma
  • c.370-16A>C Single submitter familial meningioma
  • c.370-17A>C Single submitter familial meningioma
  • c.370-17A>T Single submitter familial meningioma
  • c.370-19A>G Single submitter familial meningioma
  • c.370-20A>C Single submitter familial meningioma
  • c.370-8A>C Single submitter familial meningioma
  • c.370-9G>T Single submitter familial meningioma
  • c.51+10A>C Single submitter familial meningioma
  • c.51+19G>A Single submitter familial meningioma
  • c.52-12T>G Single submitter familial meningioma
  • c.52-15A>G Single submitter familial meningioma
  • c.52-20G>T Single submitter familial meningioma
  • c.52-5A>G Single submitter familial meningioma
  • c.52-6C>T Single submitter familial meningioma
  • c.541+10A>G Single submitter familial meningioma
  • c.541+14_541+15insC Single submitter familial meningioma
  • c.541+18G>C Single submitter familial meningioma
  • c.541+254G>A Single submitter
  • c.541+7G>T Single submitter familial meningioma
  • c.541+8A>C Single submitter familial meningioma
  • c.541+9A>C Single submitter familial meningioma
  • c.542-13T>C Single submitter familial meningioma
  • c.542-13T>G Single submitter familial meningioma
  • c.542-15A>C Single submitter familial meningioma
  • c.542-16A>G Single submitter familial meningioma
  • c.542-195C>A Single submitter
  • c.542-4C>G Single submitter familial meningioma
  • c.542-4C>T Single submitter familial meningioma
  • c.542-57dup Single submitter
  • c.542-6C>T Single submitter familial meningioma
  • c.542-7A>G Single submitter familial meningioma
  • c.542-83G>A Single submitter
  • c.542-8C>G Single submitter familial meningioma
  • c.542-8C>T Single submitter familial meningioma
  • c.7+10A>C Single submitter familial meningioma
  • c.7+11dup Single submitter familial meningioma
  • c.7+12T>A Single submitter familial meningioma
  • c.7+12T>C Single submitter familial meningioma
  • c.7+16T>C Single submitter familial meningioma
  • c.7+17A>G Single submitter familial meningioma
  • c.7+19A>G Single submitter familial meningioma
  • c.714+14A>G Single submitter familial meningioma
  • c.714+15C>T Single submitter familial meningioma
  • c.714+16A>G Single submitter familial meningioma
  • c.714+17T>C Single submitter familial meningioma
  • c.714+185A>G Single submitter
  • c.714+191T>C Single submitter
  • c.714+19C>A Single submitter familial meningioma
  • c.714+20A>G Single submitter familial meningioma
  • c.714+8C>T Single submitter familial meningioma
  • c.714+9A>G Single submitter familial meningioma
  • c.715-11C>G Single submitter familial meningioma
  • c.715-11C>T Single submitter familial meningioma
  • c.715-11dup Single submitter familial meningioma
  • c.715-12C>A Single submitter familial meningioma
  • c.715-12C>G Single submitter familial meningioma
  • c.715-12C>T Single submitter familial meningioma
  • c.715-15G>A Single submitter familial meningioma
  • c.715-16T>A Single submitter familial meningioma
  • c.715-19G>A Single submitter familial meningioma
  • c.715-20A>C Single submitter familial meningioma
  • c.715-20A>G Single submitter familial meningioma
  • c.715-6T>G Single submitter familial meningioma
  • c.816+12A>G Single submitter familial meningioma
  • c.816+14A>G Single submitter familial meningioma
  • c.816+7G>A Single submitter familial meningioma
  • c.816+8T>C Single submitter familial meningioma
  • c.817-12T>G Single submitter familial meningioma
  • c.817-15T>C Single submitter familial meningioma
  • c.817-15T>G Single submitter familial meningioma
  • c.817-16G>C Single submitter familial meningioma
  • c.817-16G>T Single submitter familial meningioma
  • c.817-18C>G Single submitter familial meningioma
  • c.817-18C>T Single submitter familial meningioma
  • c.817-20T>A Single submitter familial meningioma
  • c.817-226G>A Single submitter
  • c.817-62A>C Single submitter
  • c.817-9T>C Single submitter familial meningioma
  • c.-45-8dup Single submitter
  • p.Ala121= Single submitter hereditary neoplastic syndrome
  • p.Ala14= Single submitter hereditary neoplastic syndrome
  • p.Ala141= Single submitter familial meningioma
  • p.Ala145= Single submitter hereditary neoplastic syndrome
  • p.Ala176= Single submitter hereditary neoplastic syndrome
  • p.Ala192= Single submitter hereditary neoplastic syndrome
  • p.Ala286= Single submitter hereditary neoplastic syndrome
  • p.Ala290= Single submitter hereditary neoplastic syndrome
  • p.Ala326= Single submitter familial meningioma
  • p.Ala35= Single submitter hereditary neoplastic syndrome
  • p.Ala378= Single submitter hereditary neoplastic syndrome
  • p.Ala86= Single submitter hereditary neoplastic syndrome
  • p.Arg148= Single submitter familial meningioma
  • p.Arg158= Single submitter hereditary neoplastic syndrome
  • p.Arg163= Single submitter familial meningioma
  • p.Arg195= Single submitter familial meningioma
  • p.Arg201= Single submitter
  • p.Arg216= Single submitter hereditary neoplastic syndrome
  • p.Arg223= Single submitter hereditary neoplastic syndrome
  • p.Arg239= Single submitter hereditary neoplastic syndrome
  • p.Arg257= Single submitter familial meningioma
  • p.Arg299= Single submitter familial meningioma
  • p.Arg313= Single submitter hereditary neoplastic syndrome
  • p.Arg78= Single submitter familial meningioma
  • p.Asn144= Single submitter hereditary neoplastic syndrome
  • p.Asn327Lys Single submitter hereditary neoplastic syndrome
  • p.Asn337= Single submitter familial meningioma

Uncertain significance 533

Showing the top 300 by review status; the full set is in the sitemap.