SPPL2A — 367 ClinVar variants

All ClinVar germline SPPL2A variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 169 flagged for review →

2 Pathogenic · 2 Conflicting · 11 Benign · 8 Benign/Likely benign · 131 Likely benign · 213 Uncertain significance

Full SPPL2A gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 169

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors lean, ClinVar uncertain 135

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 34

The independent predictors disagree with each other — read with care.

All SPPL2A variants

Pathogenic 2

  • c.1328-1G>A No assertion criteria immunodeficiency 86
  • c.733+1G>A No assertion criteria immunodeficiency 86

Conflicting classifications of pathogenicity 2

Benign 11

Benign/Likely benign 8

Likely benign 131

Uncertain significance 213