SRPX2 — 200 ClinVar variants

All ClinVar germline SRPX2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 104 flagged for review →

1 Pathogenic · 1 Likely pathogenic · 18 Conflicting · 18 Benign · 4 Benign/Likely benign · 52 Likely benign · 106 Uncertain significance

Full SRPX2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 104

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 13

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 74

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 17

The independent predictors disagree with each other — read with care.

All SRPX2 variants

Pathogenic 1

  • p.Gln395Ter Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked

Likely pathogenic 1

Conflicting classifications of pathogenicity 18

  • p.Ala280= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Arg202Gln Single submitter genetic developmental and epileptic encephalopathy ⚠
  • p.Arg246Gln Single submitter History of neurodevelopmental disorder ⚠
  • p.Arg298His Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠
  • p.Arg310Cys Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠
  • p.Arg410His Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠
  • p.Asn327Ser Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠
  • p.Asn400Ser Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠
  • p.Gly216Ser Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠
  • p.Gly28Asp Single submitter ⚠
  • p.His154Asp Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠
  • p.His231Gln Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠
  • p.Leu344Ile Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠
  • p.Leu83Pro Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠
  • p.Lys75Met Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠
  • p.Pro270Leu Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠
  • p.Ser108Asn Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠
  • p.Val328Ile Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked ⚠

Benign 18

Benign/Likely benign 4

  • p.Arg161= Multiple submitters rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Arg458Gln Multiple submitters rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Pro208= Multiple submitters rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Tyr431= Multiple submitters rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked

Likely benign 52

  • c.1217+35G>C Multiple submitters
  • c.164-158T>G Multiple submitters
  • c.533-30G>A Multiple submitters
  • c.782-27C>T Multiple submitters
  • c.*60G>A Multiple submitters
  • p.Ala69= Multiple submitters rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Arg86His Multiple submitters rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Gln407= Multiple submitters History of neurodevelopmental disorder
  • p.Gly294= Multiple submitters rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.His123= Multiple submitters rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.His188= Multiple submitters rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Ser150Phe Multiple submitters rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • c.1095+237G>A Single submitter
  • c.1095+276G>A Single submitter
  • c.163+293G>T Single submitter
  • c.164-218_164-217del Single submitter
  • c.164-231T>G Single submitter
  • c.164-234T>G Single submitter
  • c.355+8G>A Single submitter
  • c.355+8G>T Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • c.533-117T>C Single submitter
  • c.659+8_659+22del Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • c.660-17C>T Single submitter
  • c.781+20T>A Single submitter
  • c.782-189C>T Single submitter
  • c.82+243C>T Single submitter
  • c.962-16C>T Single submitter
  • c.-37A>G Single submitter
  • p.Arg355Gln Single submitter
  • p.Arg413Cys Single submitter
  • p.Arg54= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Arg93= Single submitter
  • p.Asn325= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Asn327= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Cys122= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Gln337= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Glu195= Single submitter
  • p.Glu453= Single submitter
  • p.Gly216= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.His231= Single submitter
  • p.Ile361= Single submitter
  • p.Ile401Thr Single submitter
  • p.Leu381= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Pro19= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Pro233= Single submitter
  • p.Pro33= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Pro437= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Thr455= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Tyr241= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Tyr244= Single submitter rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked
  • p.Val389Met Single submitter
  • p.Arg393= No assertion criteria SRPX2-related disorder

Uncertain significance 106