STAC3 — 298 ClinVar variants

All ClinVar germline STAC3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 111 flagged for review →

9 Pathogenic · 3 Pathogenic/Likely pathogenic · 4 Likely pathogenic · 1 Conflicting · 15 Benign · 4 Benign/Likely benign · 126 Likely benign · 136 Uncertain significance

Full STAC3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 111

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors lean, ClinVar uncertain 65

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 46

The independent predictors disagree with each other — read with care.

All STAC3 variants

Pathogenic 9

  • p.Ala232fs Single submitter Bailey-Bloch congenital myopathy
  • p.Gln247Ter Single submitter Bailey-Bloch congenital myopathy
  • p.Gln28Ter Single submitter
  • p.His128fs Single submitter Bailey-Bloch congenital myopathy
  • p.Leu255fs Single submitter Bailey-Bloch congenital myopathy
  • p.Lys38Ter Single submitter Bailey-Bloch congenital myopathy
  • p.Pro100fs Single submitter Bailey-Bloch congenital myopathy
  • p.Tyr157fs Single submitter Bailey-Bloch congenital myopathy
  • c.997-1G>T No assertion criteria Bailey-Bloch congenital myopathy

Pathogenic/Likely pathogenic 3

  • p.Lys273fs Multiple submitters STAC3-related disorder
  • p.Lys288Ter Multiple submitters Bailey-Bloch congenital myopathy
  • p.Trp284Ser Multiple submitters Bailey-Bloch congenital myopathy

Likely pathogenic 4

  • c.432+1G>A Single submitter Bailey-Bloch congenital myopathy
  • c.670+2T>A Single submitter Bailey-Bloch congenital myopathy
  • p.Leu30fs Single submitter congenital myopathy
  • p.Val111fs Single submitter Bailey-Bloch congenital myopathy

Conflicting classifications of pathogenicity 1

  • c.432+4A>T Single submitter Bailey-Bloch congenital myopathy

Benign 15

Benign/Likely benign 4

  • c.996+17A>T Multiple submitters Bailey-Bloch congenital myopathy
  • c.-1G>A Multiple submitters
  • p.Arg119Cys Multiple submitters Bailey-Bloch congenital myopathy
  • p.Glu362= Multiple submitters Bailey-Bloch congenital myopathy

Likely benign 126

  • c.433-15C>T Multiple submitters Bailey-Bloch congenital myopathy
  • c.433-19dup Multiple submitters Bailey-Bloch congenital myopathy
  • c.670+33G>A Multiple submitters
  • c.671-20G>A Multiple submitters Bailey-Bloch congenital myopathy
  • p.Ala171= Multiple submitters Bailey-Bloch congenital myopathy
  • p.Asn86= Multiple submitters Bailey-Bloch congenital myopathy
  • p.Gly290= Multiple submitters Bailey-Bloch congenital myopathy
  • p.Pro221= Multiple submitters Bailey-Bloch congenital myopathy
  • c.334+13G>A Single submitter Bailey-Bloch congenital myopathy
  • c.334+14G>A Single submitter Bailey-Bloch congenital myopathy
  • c.334+7C>T Single submitter Bailey-Bloch congenital myopathy
  • c.334+9T>C Single submitter Bailey-Bloch congenital myopathy
  • c.335-10C>T Single submitter Bailey-Bloch congenital myopathy
  • c.335-9T>C Single submitter Bailey-Bloch congenital myopathy
  • c.432+11T>C Single submitter Bailey-Bloch congenital myopathy
  • c.432+143G>A Single submitter
  • c.432+15G>A Single submitter
  • c.432+17G>A Single submitter Bailey-Bloch congenital myopathy
  • c.432+20C>G Single submitter Bailey-Bloch congenital myopathy
  • c.432+97C>T Single submitter
  • c.433-180del Single submitter
  • c.433-183_433-180del Single submitter
  • c.433-19C>G Single submitter Bailey-Bloch congenital myopathy
  • c.433-20C>G Single submitter Bailey-Bloch congenital myopathy
  • c.505+13T>C Single submitter Bailey-Bloch congenital myopathy
  • c.505+14A>G Single submitter Bailey-Bloch congenital myopathy
  • c.505+15T>C Single submitter Bailey-Bloch congenital myopathy
  • c.505+20C>T Single submitter Bailey-Bloch congenital myopathy
  • c.505+7G>A Single submitter Bailey-Bloch congenital myopathy
  • c.505+9C>T Single submitter Bailey-Bloch congenital myopathy
  • c.506-15C>T Single submitter Bailey-Bloch congenital myopathy
  • c.506-19T>C Single submitter Bailey-Bloch congenital myopathy
  • c.506-22_506-20del Single submitter Bailey-Bloch congenital myopathy
  • c.506-3T>C Single submitter
  • c.506-6G>T Single submitter Bailey-Bloch congenital myopathy
  • c.506-7C>T Single submitter Bailey-Bloch congenital myopathy
  • c.603+10G>A Single submitter Bailey-Bloch congenital myopathy
  • c.603+7A>G Single submitter Bailey-Bloch congenital myopathy
  • c.604-165del Single submitter
  • c.604-167_604-165dup Single submitter
  • c.604-28G>A Single submitter
  • c.604-7C>T Single submitter Bailey-Bloch congenital myopathy
  • c.66+10G>A Single submitter Bailey-Bloch congenital myopathy
  • c.66+11G>A Single submitter Bailey-Bloch congenital myopathy
  • c.66+19C>T Single submitter Bailey-Bloch congenital myopathy
  • c.66+8T>C Single submitter Bailey-Bloch congenital myopathy
  • c.67-13C>T Single submitter Bailey-Bloch congenital myopathy
  • c.67-5C>T Single submitter Bailey-Bloch congenital myopathy
  • c.670+19C>T Single submitter Bailey-Bloch congenital myopathy
  • c.671-10C>G Single submitter Bailey-Bloch congenital myopathy
  • c.671-17G>C Single submitter Bailey-Bloch congenital myopathy
  • c.720+18del Single submitter Bailey-Bloch congenital myopathy
  • c.720+19_720+20insAAGAATCCTTCCTCCCTTGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGCAATAGAGTGACCCAACATCGCGAACAACAACCCCGTCCCGGAGAGAGATCGGTGGGNNNNNNNNNNAAAAAAAAAAAAAAAAAAAA Single submitter Bailey-Bloch congenital myopathy
  • c.720+44A>G Single submitter
  • c.720+9C>A Single submitter Bailey-Bloch congenital myopathy
  • c.720+9C>G Single submitter
  • c.721-15C>T Single submitter Bailey-Bloch congenital myopathy
  • c.806+8G>T Single submitter Bailey-Bloch congenital myopathy
  • c.807-12T>C Single submitter Bailey-Bloch congenital myopathy
  • c.807-13C>T Single submitter Bailey-Bloch congenital myopathy
  • c.807-16T>C Single submitter Bailey-Bloch congenital myopathy
  • c.807-5C>A Single submitter Bailey-Bloch congenital myopathy
  • c.858+14C>A Single submitter Bailey-Bloch congenital myopathy
  • c.859-11_859-8dup Single submitter Bailey-Bloch congenital myopathy
  • c.859-18C>G Single submitter Bailey-Bloch congenital myopathy
  • c.859-20C>T Single submitter Bailey-Bloch congenital myopathy
  • c.859-4C>A Single submitter Bailey-Bloch congenital myopathy
  • c.859-4C>T Single submitter Bailey-Bloch congenital myopathy
  • c.996+17A>G Single submitter Bailey-Bloch congenital myopathy
  • c.997-14_997-7del Single submitter Bailey-Bloch congenital myopathy
  • c.997-14C>T Single submitter Bailey-Bloch congenital myopathy
  • c.997-19T>C Single submitter Bailey-Bloch congenital myopathy
  • c.997-5_997-3del Single submitter Bailey-Bloch congenital myopathy
  • c.997-60_997-58del Single submitter
  • c.997-6T>C Single submitter Bailey-Bloch congenital myopathy
  • c.997-6T>G Single submitter Bailey-Bloch congenital myopathy
  • c.997-9A>T Single submitter Bailey-Bloch congenital myopathy
  • c.-1-123G>A Single submitter
  • c.-1-201G>C Single submitter
  • p.Ala341= Single submitter Bailey-Bloch congenital myopathy
  • p.Arg108= Single submitter Bailey-Bloch congenital myopathy
  • p.Arg139= Single submitter Bailey-Bloch congenital myopathy
  • p.Arg173= Single submitter Bailey-Bloch congenital myopathy
  • p.Arg173His Single submitter Bailey-Bloch congenital myopathy
  • p.Arg321= Single submitter Bailey-Bloch congenital myopathy
  • p.Asn174= Single submitter Bailey-Bloch congenital myopathy
  • p.Asn281= Single submitter Bailey-Bloch congenital myopathy
  • p.Asp278= Single submitter Bailey-Bloch congenital myopathy
  • p.Asp331= Single submitter Bailey-Bloch congenital myopathy
  • p.Gln222= Single submitter Bailey-Bloch congenital myopathy
  • p.Gln248= Single submitter Bailey-Bloch congenital myopathy
  • p.Gln47= Single submitter Bailey-Bloch congenital myopathy
  • p.Glu322= Single submitter Bailey-Bloch congenital myopathy
  • p.Glu72= Single submitter Bailey-Bloch congenital myopathy
  • p.Glu74= Single submitter Bailey-Bloch congenital myopathy
  • p.Glu76= Single submitter Bailey-Bloch congenital myopathy
  • p.Gly147= Single submitter Bailey-Bloch congenital myopathy
  • p.Gly338= Single submitter Bailey-Bloch congenital myopathy
  • p.Gly343= Single submitter Bailey-Bloch congenital myopathy
  • p.His149= Single submitter Bailey-Bloch congenital myopathy
  • p.His90= Single submitter Bailey-Bloch congenital myopathy
  • p.Ile277= Single submitter Bailey-Bloch congenital myopathy
  • p.Leu181= Single submitter Bailey-Bloch congenital myopathy
  • p.Leu261= Single submitter Bailey-Bloch congenital myopathy
  • p.Leu7= Single submitter Bailey-Bloch congenital myopathy
  • p.Lys273= Single submitter Bailey-Bloch congenital myopathy
  • p.Lys83= Single submitter Bailey-Bloch congenital myopathy
  • p.Lys88= Single submitter Bailey-Bloch congenital myopathy
  • p.Lys91= Single submitter Bailey-Bloch congenital myopathy
  • p.Phe141= Single submitter Bailey-Bloch congenital myopathy
  • p.Phe295Leu Single submitter Bailey-Bloch congenital myopathy ⚠
  • p.Phe356= Single submitter Bailey-Bloch congenital myopathy
  • p.Phe92= Single submitter Bailey-Bloch congenital myopathy
  • p.Pro100= Single submitter Bailey-Bloch congenital myopathy
  • p.Pro155= Single submitter Bailey-Bloch congenital myopathy
  • p.Pro237= Single submitter
  • p.Pro298= Single submitter Bailey-Bloch congenital myopathy
  • p.Pro43= Single submitter Bailey-Bloch congenital myopathy
  • p.Thr125= Single submitter Bailey-Bloch congenital myopathy
  • p.Thr37= Single submitter Bailey-Bloch congenital myopathy
  • p.Tyr134= Single submitter Bailey-Bloch congenital myopathy
  • p.Tyr162= Single submitter Bailey-Bloch congenital myopathy
  • p.Val165= Single submitter Bailey-Bloch congenital myopathy
  • p.Val293= Single submitter Bailey-Bloch congenital myopathy
  • p.Val313= Single submitter
  • p.Val318= Single submitter Bailey-Bloch congenital myopathy

Uncertain significance 136