SUZ12 — 213 ClinVar variants
All ClinVar germline SUZ12 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 101 flagged for review →
15 Pathogenic · 5 Pathogenic/Likely pathogenic · 19 Likely pathogenic · 2 Conflicting · 4 Benign · 3 Benign/Likely benign · 43 Likely benign · 122 Uncertain significance
Full SUZ12 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 101
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
SUZ12 p.Gly47Ala
Conflicting
Single submitter
Inborn genetic diseases
-
SUZ12 p.Thr408Arg
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 67
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
SUZ12 p.Arg458Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
SUZ12 p.Ile491Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
SUZ12 p.Lys143Glu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
SUZ12 p.Met144Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
SUZ12 p.Ala18Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Ala231Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Ala29Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Ala29Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Ala30Val
Uncertain significance
Single submitter
Inborn genetic diseases
- SUZ12 p.Ala371Val Uncertain significance Single submitter
-
SUZ12 p.Ala378Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Ala54Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Arg288His
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Arg508Cys
Uncertain significance
Single submitter
Imagawa-Matsumoto syndrome
- SUZ12 p.Arg516Cys Uncertain significance Single submitter
- SUZ12 p.Arg516Ser Uncertain significance Single submitter
-
SUZ12 p.Arg532Gly
Uncertain significance
Single submitter
SUZ12-related disorder
- SUZ12 p.Arg682Cys Uncertain significance Single submitter
-
SUZ12 p.Arg682His
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Asn263Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Asn271Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Asn271Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Asn287Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Asn366Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Asn517Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- SUZ12 p.Asp169Glu Uncertain significance Single submitter
- SUZ12 p.Asp169Gly Uncertain significance Single submitter
-
SUZ12 p.Asp409Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Asp417Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Asp605Asn
Uncertain significance
Single submitter
Imagawa-Matsumoto syndrome
- SUZ12 p.Cys450Trp Uncertain significance Single submitter
- SUZ12 p.Gln212His Uncertain significance Single submitter
-
SUZ12 p.Glu147Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Glu289Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Glu703Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Glu723Gly
Uncertain significance
Single submitter
Inborn genetic diseases
- SUZ12 p.Gly49Val Uncertain significance Single submitter
-
SUZ12 p.Gly9Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- SUZ12 p.His471Pro Uncertain significance Single submitter
- SUZ12 p.His6Gln Uncertain significance Single submitter
-
SUZ12 p.Ile203Val
Uncertain significance
Single submitter
Inborn genetic diseases
- SUZ12 p.Ile373Val Uncertain significance Single submitter
- SUZ12 p.Ile506Val Uncertain significance Single submitter
- SUZ12 p.Ile525Val Uncertain significance Single submitter
- SUZ12 p.Leu410Val Uncertain significance Single submitter
-
SUZ12 p.Leu616Phe
Uncertain significance
Single submitter
Imagawa-Matsumoto syndrome
-
SUZ12 p.Leu668Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Lys40Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Lys646Asn
Uncertain significance
Single submitter
Imagawa-Matsumoto syndrome
- SUZ12 p.Phe543Cys Uncertain significance Single submitter
- SUZ12 p.Phe639Leu Uncertain significance Single submitter
-
SUZ12 p.Ser119Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Ser175Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- SUZ12 p.Ser233Cys Uncertain significance Single submitter
-
SUZ12 p.Ser37Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- SUZ12 p.Ser490Pro Uncertain significance Single submitter
-
SUZ12 p.Ser51Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Ser55Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Thr131Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- SUZ12 p.Thr162Ser Uncertain significance Single submitter
-
SUZ12 p.Thr358Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Thr412Ala
Uncertain significance
Single submitter
Imagawa-Matsumoto syndrome
-
SUZ12 p.Thr679Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Tyr499Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Val678Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Val71Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Val640Ile
Uncertain significance
No assertion criteria
teratoma
Predictors split 32
The independent predictors disagree with each other — read with care.
- SUZ12 p.Ala378Pro Uncertain significance Single submitter
- SUZ12 p.Arg306Thr Uncertain significance Single submitter
- SUZ12 p.Arg307Cys Uncertain significance Single submitter
-
SUZ12 p.Arg307His
Uncertain significance
Single submitter
Imagawa-Matsumoto syndrome
- SUZ12 p.Arg535Gln Uncertain significance Single submitter
-
SUZ12 p.Arg654Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Gln599His
Uncertain significance
Single submitter
Weaver syndrome
- SUZ12 p.Glu347Lys Uncertain significance Single submitter
- SUZ12 p.Glu683Val Uncertain significance Single submitter
-
SUZ12 p.Glu84Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Gly691Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.His112Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.His243Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.His243Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.His449Asn
Uncertain significance
Single submitter
Inborn genetic diseases
- SUZ12 p.Ile109Met Uncertain significance Single submitter
- SUZ12 p.Ile669Thr Uncertain significance Single submitter
-
SUZ12 p.Leu338Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Leu338Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Leu529Phe
Uncertain significance
Single submitter
Inborn genetic diseases
- SUZ12 p.Lys341Gln Uncertain significance Single submitter
-
SUZ12 p.Met118Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Met137Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Met540Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- SUZ12 p.Phe25Leu Uncertain significance Single submitter
-
SUZ12 p.Pro353Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Pro524His
Uncertain significance
Single submitter
Inborn genetic diseases
-
SUZ12 p.Ser350Phe
Likely pathogenic
Single submitter
Imagawa-Matsumoto syndrome
- SUZ12 p.Ser462Gly Uncertain significance Single submitter
- SUZ12 p.Ser472Asn Uncertain significance Single submitter
-
SUZ12 p.Ser57Phe
Uncertain significance
Single submitter
Inborn genetic diseases
- SUZ12 p.Val79Asp Uncertain significance Single submitter
All SUZ12 variants
Pathogenic 15
- c.1794+1G>A Single submitter
- c.386+1G>A Single submitter Imagawa-Matsumoto syndrome
- p.Arg654Ter Single submitter Imagawa-Matsumoto syndrome
- p.Gln553Ter Single submitter Imagawa-Matsumoto syndrome
- p.Gln631Ter Single submitter Imagawa-Matsumoto syndrome
- p.Glu610fs Single submitter
- p.Glu610Gln Single submitter Imagawa-Matsumoto syndrome
- p.Lys190fs Single submitter
- p.Lys197fs Single submitter Inborn genetic diseases
- p.Lys521fs Single submitter
- p.Tyr117fs Single submitter
- p.Tyr52Ter Single submitter
- p.Ala282fs No assertion criteria Imagawa-Matsumoto syndrome
- p.Glu610Val No assertion criteria Imagawa-Matsumoto syndrome
- p.Phe603Leu No assertion criteria Imagawa-Matsumoto syndrome
Pathogenic/Likely pathogenic 5
- c.1023+1G>C Multiple submitters SUZ12-related disorder
- p.Arg121Ter Multiple submitters Imagawa-Matsumoto syndrome
- p.Arg286Ter Multiple submitters Inborn genetic diseases
- p.Arg535Ter Multiple submitters SUZ12-related disorder
- p.Leu385fs Multiple submitters acute megakaryoblastic leukemia in down syndrome
Likely pathogenic 19
- c.1437+1G>T Single submitter Imagawa-Matsumoto syndrome
- c.1437+3_1437+6del Single submitter
- c.321+1G>C Single submitter SUZ12-related disorder
- p.Ala378fs Single submitter Imagawa-Matsumoto syndrome
- p.Arg196fs Single submitter
- p.Arg196Thr Single submitter SUZ12-related disorder
- p.Arg423Ter Single submitter Imagawa-Matsumoto syndrome
- p.Gln205Ter Single submitter SUZ12-related disorder
- p.Gln298Ter Single submitter Imagawa-Matsumoto syndrome
- p.Gln387Ter Single submitter
- p.Glu415fs Single submitter
- p.Gly484fs Single submitter non-immune hydrops fetalis
- p.Leu359fs Single submitter Imagawa-Matsumoto syndrome
- p.Leu448fs Single submitter Imagawa-Matsumoto syndrome
- p.Leu660Pro Single submitter Imagawa-Matsumoto syndrome
- p.Lys330Ter Single submitter Imagawa-Matsumoto syndrome
- p.Ser350Phe Single submitter Imagawa-Matsumoto syndrome ⚠
- p.Tyr565_Phe566insTer Single submitter SUZ12-related disorder
- p.Tyr565fs Single submitter SUZ12-related disorder
Conflicting classifications of pathogenicity 2
- p.Gly47Ala Single submitter Inborn genetic diseases ⚠
- p.Thr408Arg Single submitter Inborn genetic diseases ⚠
Benign 4
- p.Asn422= Multiple submitters
- p.Val71Met Multiple submitters
- c.275-843A>G Single submitter
- p.Tyr97= Single submitter
Benign/Likely benign 3
- c.274+8T>C Multiple submitters Imagawa-Matsumoto syndrome
- p.Ser59del Multiple submitters
- p.Tyr557= Multiple submitters Imagawa-Matsumoto syndrome
Likely benign 43
- p.Cys470= Multiple submitters
- p.Gln411His Multiple submitters Inborn genetic diseases
- p.Tyr495= Multiple submitters
- c.1023+10A>G Single submitter
- c.1293+13G>A Single submitter
- c.1794+4ATT[2] Single submitter
- c.274+273G>A Single submitter
- c.274+321C>T Single submitter
- c.274+899C>T Single submitter
- c.275-1072del Single submitter
- c.455+10T>C Single submitter
- c.455+13A>C Single submitter
- c.455+17G>C Single submitter
- c.455+18T>C Single submitter
- c.456-3T>A Single submitter
- c.456-4_456-3del Single submitter
- c.506-6A>G Single submitter
- p.Ala33Val Single submitter
- p.Ala34Gly Single submitter Inborn genetic diseases
- p.Ala64= Single submitter
- p.Ala66Thr Single submitter
- p.Asn436= Single submitter
- p.Asn716Ser Single submitter
- p.Gly23= Single submitter
- p.Gly625= Single submitter Inborn genetic diseases
- p.Ile475Val Single submitter
- p.Leu87= Single submitter
- p.Phe346= Single submitter
- p.Phe86= Single submitter
- p.Pro224= Single submitter
- p.Pro696Ser Single submitter
- p.Ser249= Single submitter
- p.Ser45Gly Single submitter Inborn genetic diseases
- p.Ser717= Single submitter
- p.Ser726Asn Single submitter
- p.Thr370= Single submitter
- p.Thr370Met Single submitter
- p.Thr438= Single submitter
- p.Thr442= Single submitter
- p.Thr679Ile Single submitter
- p.Thr708= Single submitter
- p.Tyr643= Single submitter
- p.Asn366Ser No assertion criteria SUZ12-related disorder
Uncertain significance 122
- p.Arg458Cys Multiple submitters Inborn genetic diseases ⚠
- p.Ile491Val Multiple submitters Inborn genetic diseases ⚠
- p.Lys143Glu Multiple submitters Inborn genetic diseases ⚠
- p.Met144Thr Multiple submitters Inborn genetic diseases ⚠
- c.1794+6T>A Single submitter Inborn genetic diseases
- c.1795-5C>T Single submitter
- c.1874+8A>G Single submitter neurodevelopmental disorder
- c.274+4_274+7del Single submitter
- c.274+5G>A Single submitter Imagawa-Matsumoto syndrome
- c.275-5C>G Single submitter
- c.591+3A>G Single submitter
- c.-35C>T Single submitter Inborn genetic diseases
- p.Ala18Gly Single submitter Inborn genetic diseases ⚠
- p.Ala231Gly Single submitter Inborn genetic diseases ⚠
- p.Ala29Pro Single submitter Inborn genetic diseases ⚠
- p.Ala29Val Single submitter Inborn genetic diseases ⚠
- p.Ala30Val Single submitter Inborn genetic diseases ⚠
- p.Ala371Val Single submitter ⚠
- p.Ala378Gly Single submitter Inborn genetic diseases ⚠
- p.Ala378Pro Single submitter ⚠
- p.Ala54Val Single submitter Inborn genetic diseases ⚠
- p.Arg288His Single submitter Inborn genetic diseases ⚠
- p.Arg306Thr Single submitter ⚠
- p.Arg307Cys Single submitter ⚠
- p.Arg307His Single submitter Imagawa-Matsumoto syndrome ⚠
- p.Arg508Cys Single submitter Imagawa-Matsumoto syndrome ⚠
- p.Arg516Cys Single submitter ⚠
- p.Arg516Ser Single submitter ⚠
- p.Arg532Gly Single submitter SUZ12-related disorder ⚠
- p.Arg535Gln Single submitter ⚠
- p.Arg654Gln Single submitter Inborn genetic diseases ⚠
- p.Arg682Cys Single submitter ⚠
- p.Arg682His Single submitter Inborn genetic diseases ⚠
- p.Asn263Ser Single submitter Inborn genetic diseases ⚠
- p.Asn271Ile Single submitter Inborn genetic diseases ⚠
- p.Asn271Ser Single submitter Inborn genetic diseases ⚠
- p.Asn287Asp Single submitter Inborn genetic diseases ⚠
- p.Asn366Lys Single submitter Inborn genetic diseases ⚠
- p.Asn517Ser Single submitter Inborn genetic diseases ⚠
- p.Asp169Glu Single submitter ⚠
- p.Asp169Gly Single submitter ⚠
- p.Asp409Gly Single submitter Inborn genetic diseases ⚠
- p.Asp417Gly Single submitter Inborn genetic diseases ⚠
- p.Asp605Asn Single submitter Imagawa-Matsumoto syndrome ⚠
- p.Cys450Trp Single submitter ⚠
- p.Gln212His Single submitter ⚠
- p.Gln599His Single submitter Weaver syndrome ⚠
- p.Gln685Ter Single submitter
- p.Gln686Ter Single submitter
- p.Glu147Gln Single submitter Inborn genetic diseases ⚠
- p.Glu272Ter Single submitter Developmental disorder
- p.Glu289Lys Single submitter Inborn genetic diseases ⚠
- p.Glu347Lys Single submitter ⚠
- p.Glu683Val Single submitter ⚠
- p.Glu703Ala Single submitter Inborn genetic diseases ⚠
- p.Glu723fs Single submitter Overgrowth
- p.Glu723Gly Single submitter Inborn genetic diseases ⚠
- p.Glu84Lys Single submitter Inborn genetic diseases ⚠
- p.Gly39Asp Single submitter
- p.Gly42Asp Single submitter Inborn genetic diseases
- p.Gly48Glu Single submitter Inborn genetic diseases
- p.Gly49Val Single submitter ⚠
- p.Gly691Glu Single submitter Inborn genetic diseases ⚠
- p.Gly9Arg Single submitter Inborn genetic diseases ⚠
- p.His112Tyr Single submitter Inborn genetic diseases ⚠
- p.His243Arg Single submitter Inborn genetic diseases ⚠
- p.His243Tyr Single submitter Inborn genetic diseases ⚠
- p.His449Asn Single submitter Inborn genetic diseases ⚠
- p.His471Pro Single submitter ⚠
- p.His6Asp Single submitter
- p.His6Gln Single submitter ⚠
- p.Ile109Met Single submitter ⚠
- p.Ile203Val Single submitter Inborn genetic diseases ⚠
- p.Ile373Val Single submitter ⚠
- p.Ile506Val Single submitter ⚠
- p.Ile525Val Single submitter ⚠
- p.Ile669Thr Single submitter ⚠
- p.Leu338Phe Single submitter Inborn genetic diseases ⚠
- p.Leu338Pro Single submitter Inborn genetic diseases ⚠
- p.Leu410Val Single submitter ⚠
- p.Leu529Phe Single submitter Inborn genetic diseases ⚠
- p.Leu616Phe Single submitter Imagawa-Matsumoto syndrome ⚠
- p.Leu668Val Single submitter Inborn genetic diseases ⚠
- p.Lys341Gln Single submitter ⚠
- p.Lys40Arg Single submitter Inborn genetic diseases ⚠
- p.Lys646Asn Single submitter Imagawa-Matsumoto syndrome ⚠
- p.Lys650del Single submitter SUZ12-related disorder
- p.Lys718fs Single submitter
- p.Lys720fs Single submitter
- p.Met118Thr Single submitter Inborn genetic diseases ⚠
- p.Met137Thr Single submitter Inborn genetic diseases ⚠
- p.Met540Ile Single submitter Inborn genetic diseases ⚠
- p.Phe25Leu Single submitter ⚠
- p.Phe543Cys Single submitter ⚠
- p.Phe639Leu Single submitter ⚠
- p.Pro214Ala Single submitter
- p.Pro353Ala Single submitter Inborn genetic diseases ⚠
- p.Pro524His Single submitter Inborn genetic diseases ⚠
- p.Ser119Cys Single submitter Inborn genetic diseases ⚠
- p.Ser175Leu Single submitter Inborn genetic diseases ⚠
- p.Ser233Cys Single submitter ⚠
- p.Ser37Leu Single submitter Inborn genetic diseases ⚠
- p.Ser462Gly Single submitter ⚠
- p.Ser472Asn Single submitter ⚠
- p.Ser490Pro Single submitter ⚠
- p.Ser51Gly Single submitter Inborn genetic diseases ⚠
- p.Ser55Ala Single submitter Inborn genetic diseases ⚠
- p.Ser57Phe Single submitter Inborn genetic diseases ⚠
- p.Ter740Arg Single submitter
- p.Thr131Arg Single submitter Inborn genetic diseases ⚠
- p.Thr162Ser Single submitter ⚠
- p.Thr358Ala Single submitter Inborn genetic diseases ⚠
- p.Thr412Ala Single submitter Imagawa-Matsumoto syndrome ⚠
- p.Thr596fs Single submitter
- p.Thr679Asn Single submitter Inborn genetic diseases ⚠
- p.Trp334Ter Single submitter
- p.Tyr499Cys Single submitter Inborn genetic diseases ⚠
- p.Val678Ile Single submitter Inborn genetic diseases ⚠
- p.Val71Leu Single submitter Inborn genetic diseases ⚠
- p.Val730fs Single submitter
- p.Val79Asp Single submitter ⚠
- p.Val640Ile No assertion criteria teratoma ⚠