SYNCRIP — 133 ClinVar variants
All ClinVar germline SYNCRIP variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 94 flagged for review →
3 Pathogenic · 1 Pathogenic/Likely pathogenic · 1 Likely pathogenic · 1 Benign · 17 Likely benign · 110 Uncertain significance
Full SYNCRIP gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 94
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors lean, ClinVar uncertain 59
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
SYNCRIP p.Asn243Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
SYNCRIP p.Pro440Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
SYNCRIP p.Ser116Gly
Uncertain significance
Multiple submitters
Inborn genetic diseases
- SYNCRIP p.Ala2Val Uncertain significance Single submitter
-
SYNCRIP p.Ala346Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Ala357Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Ala374Glu
Uncertain significance
Single submitter
SYNCRIP-related neurodevelopmental disorder
-
SYNCRIP p.Ala521Thr
Uncertain significance
Single submitter
SYNCRIP-related Intellectual Disability
- SYNCRIP p.Ala553Val Uncertain significance Single submitter
-
SYNCRIP p.Arg286Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Arg343Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Arg548Cys Uncertain significance Single submitter
-
SYNCRIP p.Arg557Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Asn347Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Asn400Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Asn581Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Asn603Thr Uncertain significance Single submitter
- SYNCRIP p.Asp395Glu Uncertain significance Single submitter
-
SYNCRIP p.Asp473Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Gln258Glu Uncertain significance Single submitter
-
SYNCRIP p.Gln596Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Gln89Leu Uncertain significance Single submitter
-
SYNCRIP p.Glu121Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Glu214Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Gly315Glu Uncertain significance Single submitter
- SYNCRIP p.Gly453Asp Uncertain significance Single submitter
-
SYNCRIP p.Gly522Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Gly558Asp Uncertain significance Single submitter
-
SYNCRIP p.His277Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.His475Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.His5Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Ile22Val
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Ile234Val Uncertain significance Single submitter
-
SYNCRIP p.Leu222Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Leu260Val
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Leu291Phe Uncertain significance Single submitter
-
SYNCRIP p.Lys221Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Lys283Arg Uncertain significance Single submitter
-
SYNCRIP p.Lys394Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Met388Val Uncertain significance Single submitter
- SYNCRIP p.Phe210Leu Uncertain significance Single submitter
-
SYNCRIP p.Pro180Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Pro187Arg Uncertain significance Single submitter
- SYNCRIP p.Pro187Leu Uncertain significance Single submitter
-
SYNCRIP p.Pro437Ser
Uncertain significance
Single submitter
SYNCRIP-related neurodevelopmental disorder
-
SYNCRIP p.Pro442Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Pro458Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Ser524Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Ser601Cys Uncertain significance Single submitter
-
SYNCRIP p.Ser608Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Thr162Asn Uncertain significance Single submitter
-
SYNCRIP p.Thr617Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Tyr153His
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Val152Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Val179Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Val535Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Val561Gly
Uncertain significance
Single submitter
SYNCRIP-related disorder
-
SYNCRIP p.Thr101Ile
Uncertain significance
No assertion criteria
SYNCRIP-related disorder
-
SYNCRIP p.Tyr523His
Uncertain significance
No assertion criteria
SYNCRIP-related disorder
Predictors split 35
The independent predictors disagree with each other — read with care.
-
SYNCRIP p.Glu612Val
Likely benign
Multiple submitters
Inborn genetic diseases
-
SYNCRIP p.Pro508Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
SYNCRIP p.Ala567Val
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Arg103Lys Uncertain significance Single submitter
- SYNCRIP p.Arg448Cys Uncertain significance Single submitter
-
SYNCRIP p.Arg448His
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Arg510Lys Uncertain significance Single submitter
- SYNCRIP p.Arg533Thr Uncertain significance Single submitter
-
SYNCRIP p.Arg554Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Arg577Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Asn425Lys Uncertain significance Single submitter
- SYNCRIP p.Asn584Lys Uncertain significance Single submitter
- SYNCRIP p.Asp16Gly Uncertain significance Single submitter
-
SYNCRIP p.Asp574Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Gln621His
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Gln78Arg Uncertain significance Single submitter
- SYNCRIP p.Glu163Asp Uncertain significance Single submitter
- SYNCRIP p.Glu327Val Uncertain significance Single submitter
-
SYNCRIP p.Glu380Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Glu482Lys Uncertain significance Single submitter
-
SYNCRIP p.Gly505Val
Uncertain significance
Single submitter
SYNCRIP-related neurodevelopmental disorder
- SYNCRIP p.Gly522Cys Uncertain significance Single submitter
-
SYNCRIP p.Gly541Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Gly547Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Leu57Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Lys312Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
SYNCRIP p.Pro441Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Ser230Tyr Uncertain significance Single submitter
- SYNCRIP p.Thr209Ala Uncertain significance Single submitter
-
SYNCRIP p.Thr209Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- SYNCRIP p.Thr348Ile Uncertain significance Single submitter
- SYNCRIP p.Thr443Lys Uncertain significance Single submitter
-
SYNCRIP p.Trp622Arg
Uncertain significance
Single submitter
SYNCRIP-related disorder
- SYNCRIP p.Tyr467Phe Likely benign Single submitter
-
SYNCRIP p.Tyr486Cys
Uncertain significance
Single submitter
Inborn genetic diseases
All SYNCRIP variants
Pathogenic 3
- p.Arg446Ter Single submitter
- p.Gln492fs Single submitter SYNCRIP-related neurodevelopmental disorder
- p.Ile234fs Single submitter
Pathogenic/Likely pathogenic 1
- p.Gly287fs Multiple submitters
Likely pathogenic 1
- p.Pro147fs Single submitter SYNCRIP-associated neurodevelopmental disorder
Benign 1
- p.Tyr604Cys Single submitter Inborn genetic diseases
Likely benign 17
- p.Glu612Val Multiple submitters Inborn genetic diseases ⚠
- c.1159-11A>C Single submitter
- c.375+10T>C Single submitter
- c.375+11C>T Single submitter
- c.375+19C>T Single submitter
- c.375+8T>C Single submitter
- c.-43C>T Single submitter
- p.Ala357= Single submitter
- p.Arg518= Single submitter
- p.Arg60= Single submitter
- p.Ile376Val Single submitter Inborn genetic diseases
- p.Pro158= Single submitter
- p.Tyr467Phe Single submitter ⚠
- p.Val561Ile Single submitter Inborn genetic diseases
- p.Arg548= No assertion criteria SYNCRIP-related disorder
- p.Gln592= No assertion criteria SYNCRIP-related disorder
- p.Gln596= No assertion criteria SYNCRIP-related disorder
Uncertain significance 110
- p.Ala216Thr Multiple submitters Inborn genetic diseases
- p.Asn243Ser Multiple submitters Inborn genetic diseases ⚠
- p.Pro440Leu Multiple submitters Inborn genetic diseases ⚠
- p.Pro508Leu Multiple submitters Inborn genetic diseases ⚠
- p.Ser116Gly Multiple submitters Inborn genetic diseases ⚠
- c.803-3C>A Single submitter
- c.-13+816G>T Single submitter
- c.-1C>A Single submitter
- c.-51C>T Single submitter
- p.Ala299fs Single submitter SYNCRIP-related disorder
- p.Ala2Val Single submitter ⚠
- p.Ala346Thr Single submitter Inborn genetic diseases ⚠
- p.Ala357Val Single submitter Inborn genetic diseases ⚠
- p.Ala374Glu Single submitter SYNCRIP-related neurodevelopmental disorder ⚠
- p.Ala521Thr Single submitter SYNCRIP-related Intellectual Disability ⚠
- p.Ala553Val Single submitter ⚠
- p.Ala567Val Single submitter Inborn genetic diseases ⚠
- p.Arg103Lys Single submitter ⚠
- p.Arg286Gly Single submitter Inborn genetic diseases ⚠
- p.Arg343Cys Single submitter Inborn genetic diseases ⚠
- p.Arg448Cys Single submitter ⚠
- p.Arg448His Single submitter Inborn genetic diseases ⚠
- p.Arg510Lys Single submitter ⚠
- p.Arg533Thr Single submitter ⚠
- p.Arg548Cys Single submitter ⚠
- p.Arg554Trp Single submitter Inborn genetic diseases ⚠
- p.Arg557Cys Single submitter Inborn genetic diseases ⚠
- p.Arg577Trp Single submitter Inborn genetic diseases ⚠
- p.Asn285fs Single submitter
- p.Asn347Ser Single submitter Inborn genetic diseases ⚠
- p.Asn400Ser Single submitter Inborn genetic diseases ⚠
- p.Asn425Lys Single submitter ⚠
- p.Asn581Ser Single submitter Inborn genetic diseases ⚠
- p.Asn584Lys Single submitter ⚠
- p.Asn603Thr Single submitter ⚠
- p.Asp16Gly Single submitter ⚠
- p.Asp395Glu Single submitter ⚠
- p.Asp473Glu Single submitter Inborn genetic diseases ⚠
- p.Asp574Gly Single submitter Inborn genetic diseases ⚠
- p.Asp82_Ser83insTer Single submitter neurodevelopmental disorder
- p.Gln258Glu Single submitter ⚠
- p.Gln545del Single submitter
- p.Gln596Arg Single submitter Inborn genetic diseases ⚠
- p.Gln621His Single submitter Inborn genetic diseases ⚠
- p.Gln78Arg Single submitter ⚠
- p.Gln89Leu Single submitter ⚠
- p.Glu121Lys Single submitter Inborn genetic diseases ⚠
- p.Glu163Asp Single submitter ⚠
- p.Glu214Ala Single submitter Inborn genetic diseases ⚠
- p.Glu327Val Single submitter ⚠
- p.Glu380Gln Single submitter Inborn genetic diseases ⚠
- p.Glu457Gln Single submitter
- p.Glu482Lys Single submitter ⚠
- p.Gly315Glu Single submitter ⚠
- p.Gly453Asp Single submitter ⚠
- p.Gly505Val Single submitter SYNCRIP-related neurodevelopmental disorder ⚠
- p.Gly522Cys Single submitter ⚠
- p.Gly522fs Single submitter
- p.Gly522Ser Single submitter Inborn genetic diseases ⚠
- p.Gly541Cys Single submitter Inborn genetic diseases ⚠
- p.Gly547Val Single submitter Inborn genetic diseases ⚠
- p.Gly558Asp Single submitter ⚠
- p.His277Leu Single submitter Inborn genetic diseases ⚠
- p.His475Arg Single submitter Inborn genetic diseases ⚠
- p.His5Gln Single submitter Inborn genetic diseases ⚠
- p.Ile22Val Single submitter Inborn genetic diseases ⚠
- p.Ile234Val Single submitter ⚠
- p.Leu222Met Single submitter Inborn genetic diseases ⚠
- p.Leu260Val Single submitter Inborn genetic diseases ⚠
- p.Leu291Phe Single submitter ⚠
- p.Leu57Phe Single submitter Inborn genetic diseases ⚠
- p.Lys221Thr Single submitter Inborn genetic diseases ⚠
- p.Lys283Arg Single submitter ⚠
- p.Lys284del Single submitter Inborn genetic diseases
- p.Lys312Asn Single submitter Inborn genetic diseases ⚠
- p.Lys394Gln Single submitter Inborn genetic diseases ⚠
- p.Met388Val Single submitter ⚠
- p.Phe210Leu Single submitter ⚠
- p.Phe405fs Single submitter
- p.Pro180Gln Single submitter Inborn genetic diseases ⚠
- p.Pro187Arg Single submitter ⚠
- p.Pro187Leu Single submitter ⚠
- p.Pro331Leu Single submitter Inborn genetic diseases
- p.Pro437Ser Single submitter SYNCRIP-related neurodevelopmental disorder ⚠
- p.Pro441Leu Single submitter Inborn genetic diseases ⚠
- p.Pro442Ala Single submitter Inborn genetic diseases ⚠
- p.Pro458Ser Single submitter Inborn genetic diseases ⚠
- p.Ser230Tyr Single submitter ⚠
- p.Ser524Ala Single submitter Inborn genetic diseases ⚠
- p.Ser601Cys Single submitter ⚠
- p.Ser608Cys Single submitter Inborn genetic diseases ⚠
- p.Thr134Ile Single submitter Inborn genetic diseases
- p.Thr162Asn Single submitter ⚠
- p.Thr209Ala Single submitter ⚠
- p.Thr209Ile Single submitter Inborn genetic diseases ⚠
- p.Thr348Ile Single submitter ⚠
- p.Thr443Lys Single submitter ⚠
- p.Thr617Ser Single submitter Inborn genetic diseases ⚠
- p.Trp622Arg Single submitter SYNCRIP-related disorder ⚠
- p.Tyr153His Single submitter Inborn genetic diseases ⚠
- p.Tyr456Ter Single submitter SYNCRIP-related neurodevelopmental disorder
- p.Tyr460fs Single submitter
- p.Tyr486Cys Single submitter Inborn genetic diseases ⚠
- p.Val152Leu Single submitter Inborn genetic diseases ⚠
- p.Val179Ala Single submitter Inborn genetic diseases ⚠
- p.Val273_Tyr276del Single submitter Inborn genetic diseases
- p.Val535Ile Single submitter Inborn genetic diseases ⚠
- p.Val561Gly Single submitter SYNCRIP-related disorder ⚠
- p.Thr101Ile No assertion criteria SYNCRIP-related disorder ⚠
- p.Tyr523His No assertion criteria SYNCRIP-related disorder ⚠