TAP1 — 464 ClinVar variants

All ClinVar germline TAP1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 126 flagged for review →

22 Pathogenic · 3 Pathogenic/Likely pathogenic · 6 Likely pathogenic · 10 Conflicting · 8 Benign · 18 Benign/Likely benign · 187 Likely benign · 210 Uncertain significance

Full TAP1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 126

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 4

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 92

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 30

The independent predictors disagree with each other — read with care.

All TAP1 variants

Pathogenic 22

Pathogenic/Likely pathogenic 3

Likely pathogenic 6

  • c.1740+2T>C Single submitter MHC class I deficiency
  • p.Arg655Ter Single submitter MHC class I deficiency 1
  • p.Gly323fs Single submitter TAP1-related disorder
  • p.Leu666fs Single submitter MHC class I deficiency 1
  • p.Trp133Ter Single submitter TAP1-related disorder
  • p.Trp92fs Single submitter TAP1-related disorder

Conflicting classifications of pathogenicity 10

Benign 8

  • c.2041-14A>C Multiple submitters MHC class I deficiency
  • c.598+17G>T Multiple submitters MHC class I deficiency
  • c.-34G>A Multiple submitters MHC class I deficiency
  • p.Ala146= Multiple submitters MHC class I deficiency
  • p.Gly254= Multiple submitters MHC class I deficiency
  • p.Pro661= Multiple submitters MHC class I deficiency
  • p.Val141= Multiple submitters MHC class I deficiency
  • c.714-16dup Single submitter MHC class I deficiency

Benign/Likely benign 18

  • c.1051-3C>T Multiple submitters MHC class I deficiency
  • c.2041-15G>A Multiple submitters MHC class I deficiency
  • c.-20G>A Multiple submitters MHC class I deficiency
  • p.Ala146Val Multiple submitters MHC class I deficiency
  • p.Ala370Val Multiple submitters MHC class I deficiency
  • p.Ala652= Multiple submitters MHC class I deficiency
  • p.Arg487= Multiple submitters MHC class I deficiency
  • p.Arg648Gln Multiple submitters MHC class I deficiency
  • p.Asp637Gly Multiple submitters MHC class I deficiency
  • p.Gln728Lys Multiple submitters MHC class I deficiency
  • p.Gly17Arg Multiple submitters MHC class I deficiency
  • p.Gly419Cys Multiple submitters MHC class I deficiency
  • p.His155= Multiple submitters MHC class I deficiency
  • p.Ile333Val Multiple submitters MHC class I deficiency
  • p.Ser286Phe Multiple submitters MHC class I deficiency
  • p.Val244Leu Multiple submitters MHC class I deficiency
  • p.Val458Leu Multiple submitters MHC class I deficiency
  • p.Val518Ile Multiple submitters MHC class I deficiency

Likely benign 187

  • c.1378-15C>T Multiple submitters MHC class I deficiency
  • c.1567-17G>A Multiple submitters MHC class I deficiency
  • c.1903+18C>G Multiple submitters MHC class I deficiency
  • c.2041-20G>A Multiple submitters MHC class I deficiency
  • c.713+18G>T Multiple submitters MHC class I deficiency
  • p.Gly718= Multiple submitters MHC class I deficiency
  • p.Ile665= Multiple submitters MHC class I deficiency
  • p.Leu131Pro Multiple submitters MHC class I deficiency
  • p.Leu643= Multiple submitters MHC class I deficiency
  • p.Leu729= Multiple submitters MHC class I deficiency
  • p.Pro149= Multiple submitters MHC class I deficiency
  • p.Pro516Leu Multiple submitters MHC class I deficiency
  • p.Ser293= Multiple submitters MHC class I deficiency
  • p.Thr184= Multiple submitters MHC class I deficiency
  • p.Thr184Met Multiple submitters Inborn genetic diseases
  • p.Thr273= Multiple submitters MHC class I deficiency
  • p.Thr534= Multiple submitters MHC class I deficiency
  • p.Thr558= Multiple submitters MHC class I deficiency
  • p.Tyr692= Multiple submitters MHC class I deficiency
  • p.Val162Met Multiple submitters MHC class I deficiency
  • c.1050+15T>C Single submitter MHC class I deficiency
  • c.1050+9A>G Single submitter MHC class I deficiency
  • c.1051-11T>C Single submitter MHC class I deficiency
  • c.1051-13C>A Single submitter MHC class I deficiency
  • c.1051-7T>C Single submitter MHC class I deficiency
  • c.1248+10T>G Single submitter MHC class I deficiency
  • c.1248+9C>A Single submitter MHC class I deficiency
  • c.1249-17T>C Single submitter MHC class I deficiency
  • c.1249-5T>G Single submitter MHC class I deficiency
  • c.1377+13C>T Single submitter MHC class I deficiency
  • c.1377+16C>T Single submitter MHC class I deficiency
  • c.1377+20A>G Single submitter MHC class I deficiency
  • c.1378-15C>A Single submitter MHC class I deficiency
  • c.1378-4C>G Single submitter MHC class I deficiency
  • c.1378-4C>T Single submitter MHC class I deficiency
  • c.1566+14C>G Single submitter MHC class I deficiency
  • c.1567-13C>G Single submitter MHC class I deficiency
  • c.1740+17C>A Single submitter MHC class I deficiency
  • c.1740+8dup Single submitter MHC class I deficiency
  • c.1741-15_1741-13del Single submitter MHC class I deficiency
  • c.1741-4T>G Single submitter MHC class I deficiency
  • c.1903+12A>G Single submitter MHC class I deficiency
  • c.1903+19del Single submitter MHC class I deficiency
  • c.1904-14C>T Single submitter MHC class I deficiency
  • c.2040+11C>T Single submitter MHC class I deficiency
  • c.2040+17C>T Single submitter MHC class I deficiency
  • c.2041-10C>G Single submitter MHC class I deficiency
  • c.2041-13T>C Single submitter MHC class I deficiency
  • c.2041-15G>C Single submitter MHC class I deficiency
  • c.2041-16C>T Single submitter MHC class I deficiency
  • c.2041-20G>T Single submitter MHC class I deficiency
  • c.598+12G>T Single submitter MHC class I deficiency
  • c.599-11T>C Single submitter MHC class I deficiency
  • c.599-15C>T Single submitter MHC class I deficiency
  • c.599-17C>T Single submitter MHC class I deficiency
  • c.599-19C>T Single submitter MHC class I deficiency
  • c.713+9G>C Single submitter MHC class I deficiency
  • c.714-11G>T Single submitter MHC class I deficiency
  • c.714-14C>T Single submitter MHC class I deficiency
  • c.714-9del Single submitter MHC class I deficiency
  • c.844+9T>C Single submitter MHC class I deficiency
  • c.845-12C>T Single submitter MHC class I deficiency
  • c.845-7C>A Single submitter MHC class I deficiency
  • c.845-7C>T Single submitter MHC class I deficiency
  • c.-16C>T Single submitter MHC class I deficiency
  • c.-25G>T Single submitter MHC class I deficiency
  • c.-46G>A Single submitter MHC class I deficiency
  • c.-9C>A Single submitter
  • c.*76A>C Single submitter
  • p.Ala106= Single submitter MHC class I deficiency
  • p.Ala111= Single submitter MHC class I deficiency
  • p.Ala121= Single submitter MHC class I deficiency
  • p.Ala203= Single submitter MHC class I deficiency
  • p.Ala221= Single submitter MHC class I deficiency
  • p.Ala239= Single submitter MHC class I deficiency
  • p.Ala31= Single submitter MHC class I deficiency
  • p.Ala367= Single submitter MHC class I deficiency
  • p.Ala582= Single submitter MHC class I deficiency
  • p.Ala600= Single submitter MHC class I deficiency
  • p.Ala654= Single submitter MHC class I deficiency
  • p.Ala656= Single submitter MHC class I deficiency
  • p.Ala89Val Single submitter Inborn genetic diseases
  • p.Ala94= Single submitter MHC class I deficiency
  • p.Arg10= Single submitter MHC class I deficiency
  • p.Arg129= Single submitter MHC class I deficiency
  • p.Arg186= Single submitter MHC class I deficiency
  • p.Arg270= Single submitter MHC class I deficiency
  • p.Arg287= Single submitter MHC class I deficiency
  • p.Arg5= Single submitter MHC class I deficiency
  • p.Arg691Gln Single submitter MHC class I deficiency
  • p.Asn171= Single submitter MHC class I deficiency
  • p.Asn382= Single submitter MHC class I deficiency
  • p.Asp213= Single submitter MHC class I deficiency
  • p.Asp246= Single submitter MHC class I deficiency
  • p.Asp297= Single submitter MHC class I deficiency
  • p.Asp637= Single submitter MHC class I deficiency
  • p.Gln506= Single submitter MHC class I deficiency
  • p.Gln571= Single submitter MHC class I deficiency
  • p.Gln596Arg Single submitter Inborn genetic diseases
  • p.Glu242= Single submitter MHC class I deficiency
  • p.Glu707= Single submitter MHC class I deficiency
  • p.Gly123= Single submitter MHC class I deficiency
  • p.Gly167= Single submitter MHC class I deficiency
  • p.Gly219= Single submitter MHC class I deficiency
  • p.Gly385= Single submitter MHC class I deficiency
  • p.Gly437= Single submitter MHC class I deficiency
  • p.Gly492= Single submitter MHC class I deficiency
  • p.Gly501= Single submitter MHC class I deficiency
  • p.Gly531= Single submitter MHC class I deficiency
  • p.Gly559= Single submitter MHC class I deficiency
  • p.Gly646= Single submitter MHC class I deficiency
  • p.Gly81= Single submitter MHC class I deficiency
  • p.His136= Single submitter MHC class I deficiency
  • p.His259= Single submitter MHC class I deficiency
  • p.His622= Single submitter MHC class I deficiency
  • p.Ile426= Single submitter MHC class I deficiency
  • p.Ile464Val Single submitter Inborn genetic diseases
  • p.Ile612= Single submitter MHC class I deficiency
  • p.Leu15= Single submitter MHC class I deficiency
  • p.Leu153= Single submitter MHC class I deficiency
  • p.Leu157= Single submitter MHC class I deficiency
  • p.Leu189= Single submitter
  • p.Leu191= Single submitter MHC class I deficiency
  • p.Leu196= Single submitter MHC class I deficiency
  • p.Leu216= Single submitter MHC class I deficiency
  • p.Leu230= Single submitter MHC class I deficiency
  • p.Leu241= Single submitter MHC class I deficiency
  • p.Leu28= Single submitter MHC class I deficiency
  • p.Leu29= Single submitter MHC class I deficiency
  • p.Leu295= Single submitter MHC class I deficiency
  • p.Leu30= Single submitter MHC class I deficiency
  • p.Leu314= Single submitter MHC class I deficiency
  • p.Leu327= Single submitter MHC class I deficiency
  • p.Leu335= Single submitter MHC class I deficiency
  • p.Leu337= Single submitter MHC class I deficiency
  • p.Leu341= Single submitter MHC class I deficiency
  • p.Leu352= Single submitter MHC class I deficiency
  • p.Leu394= Single submitter MHC class I deficiency
  • p.Leu400= Single submitter MHC class I deficiency
  • p.Leu461= Single submitter MHC class I deficiency
  • p.Leu462= Single submitter MHC class I deficiency
  • p.Leu521= Single submitter MHC class I deficiency
  • p.Leu54= Single submitter MHC class I deficiency
  • p.Leu554= Single submitter MHC class I deficiency
  • p.Leu563= Single submitter MHC class I deficiency
  • p.Leu564= Single submitter MHC class I deficiency
  • p.Leu62= Single submitter MHC class I deficiency
  • p.Leu698= Single submitter MHC class I deficiency
  • p.Leu705= Single submitter MHC class I deficiency
  • p.Leu713= Single submitter MHC class I deficiency
  • p.Leu715= Single submitter MHC class I deficiency
  • p.Lys389= Single submitter MHC class I deficiency
  • p.Lys97= Single submitter MHC class I deficiency
  • p.Phe243= Single submitter MHC class I deficiency
  • p.Pro108= Single submitter MHC class I deficiency
  • p.Pro16= Single submitter MHC class I deficiency
  • p.Pro205= Single submitter MHC class I deficiency
  • p.Pro466= Single submitter MHC class I deficiency
  • p.Pro489= Single submitter MHC class I deficiency
  • p.Pro496= Single submitter MHC class I deficiency
  • p.Pro53= Single submitter MHC class I deficiency
  • p.Pro570= Single submitter MHC class I deficiency
  • p.Pro9= Single submitter MHC class I deficiency
  • p.Pro98= Single submitter MHC class I deficiency
  • p.Ser118= Single submitter MHC class I deficiency
  • p.Ser188= Single submitter MHC class I deficiency
  • p.Ser364= Single submitter MHC class I deficiency
  • p.Ser644= Single submitter MHC class I deficiency
  • p.Thr128= Single submitter MHC class I deficiency
  • p.Thr208= Single submitter MHC class I deficiency
  • p.Thr292= Single submitter MHC class I deficiency
  • p.Thr331= Single submitter MHC class I deficiency
  • p.Thr435= Single submitter MHC class I deficiency
  • p.Thr446= Single submitter MHC class I deficiency
  • p.Thr455= Single submitter MHC class I deficiency
  • p.Thr485= Single submitter MHC class I deficiency
  • p.Thr50= Single submitter MHC class I deficiency
  • p.Thr527= Single submitter MHC class I deficiency
  • p.Thr604= Single submitter MHC class I deficiency
  • p.Tyr309= Single submitter MHC class I deficiency
  • p.Tyr408= Single submitter MHC class I deficiency
  • p.Tyr555= Single submitter MHC class I deficiency
  • p.Tyr686= Single submitter MHC class I deficiency
  • p.Val142= Single submitter MHC class I deficiency
  • p.Val330= Single submitter MHC class I deficiency
  • p.Val458= Single submitter MHC class I deficiency
  • p.Val590= Single submitter MHC class I deficiency

Uncertain significance 210