TAPBP — 383 ClinVar variants

All ClinVar germline TAPBP variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 188 flagged for review →

1 Pathogenic · 1 Likely pathogenic · 10 Conflicting · 9 Benign · 7 Benign/Likely benign · 130 Likely benign · 225 Uncertain significance

Full TAPBP gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 188

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 6

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 147

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 35

The independent predictors disagree with each other — read with care.

All TAPBP variants

Pathogenic 1

Likely pathogenic 1

  • p.Val317fs Single submitter MHC class I deficiency 3

Conflicting classifications of pathogenicity 10

Benign 9

  • p.Gly324= Multiple submitters MHC class I deficiency
  • p.Leu418= Multiple submitters MHC class I deficiency
  • p.Ser413= Multiple submitters MHC class I deficiency
  • c.1210+20C>T Single submitter MHC class I deficiency
  • c.1301-5dup Single submitter MHC class I deficiency
  • c.-24C>A Single submitter MHC class I deficiency
  • c.-25T>A Single submitter MHC class I deficiency
  • p.Gly35Arg Single submitter MHC class I deficiency
  • p.Pro111= Single submitter MHC class I deficiency

Benign/Likely benign 7

  • c.1301-14A>G Multiple submitters MHC class I deficiency
  • c.37+13C>G Multiple submitters MHC class I deficiency
  • p.Ala191= Multiple submitters MHC class I deficiency
  • p.Gln227= Multiple submitters MHC class I deficiency
  • p.Lys428= Multiple submitters MHC class I deficiency
  • p.Pro58= Multiple submitters MHC class I deficiency
  • p.Thr260Arg Multiple submitters MHC class I deficiency

Likely benign 130

  • c.1210+11G>A Multiple submitters MHC class I deficiency
  • c.1335+126G>C Multiple submitters
  • c.1336-4C>A Multiple submitters MHC class I deficiency
  • c.37+10C>G Multiple submitters MHC class I deficiency
  • c.869-16C>T Multiple submitters MHC class I deficiency
  • p.Ala192= Multiple submitters MHC class I deficiency
  • p.Ala343= Multiple submitters MHC class I deficiency
  • p.Arg208His Multiple submitters MHC class I deficiency
  • p.Asp412Asn Multiple submitters MHC class I deficiency
  • p.Asp59Tyr Multiple submitters MHC class I deficiency
  • p.Glu245= Multiple submitters MHC class I deficiency
  • p.Gly338= Multiple submitters MHC class I deficiency
  • p.His376= Multiple submitters MHC class I deficiency
  • p.Leu316= Multiple submitters MHC class I deficiency
  • p.Phe256= Multiple submitters MHC class I deficiency
  • p.Pro368= Multiple submitters MHC class I deficiency
  • p.Pro58Ser Multiple submitters MHC class I deficiency
  • p.Ser189= Multiple submitters MHC class I deficiency
  • p.Ser19= Multiple submitters MHC class I deficiency
  • p.Ser356= Multiple submitters MHC class I deficiency
  • p.Ser392= Multiple submitters MHC class I deficiency
  • p.Ser438= Multiple submitters MHC class I deficiency
  • p.Thr251= Multiple submitters MHC class I deficiency
  • p.Thr300= Multiple submitters MHC class I deficiency
  • c.1210+7G>C Single submitter MHC class I deficiency
  • c.1210+8C>T Single submitter MHC class I deficiency
  • c.1211-16C>T Single submitter
  • c.1300+11G>C Single submitter MHC class I deficiency
  • c.1300+16A>G Single submitter
  • c.1300+17C>A Single submitter MHC class I deficiency
  • c.1300+18C>G Single submitter MHC class I deficiency
  • c.1300+8T>C Single submitter MHC class I deficiency
  • c.1335+14C>T Single submitter MHC class I deficiency
  • c.1335+15C>G Single submitter
  • c.1335+20T>C Single submitter MHC class I deficiency
  • c.1335+42A>G Single submitter
  • c.1335+53C>G Single submitter
  • c.208+15A>T Single submitter MHC class I deficiency
  • c.208+18C>T Single submitter MHC class I deficiency
  • c.208+19G>A Single submitter MHC class I deficiency
  • c.209-17T>A Single submitter MHC class I deficiency
  • c.37+14G>A Single submitter MHC class I deficiency
  • c.37+16G>T Single submitter MHC class I deficiency
  • c.38-16C>T Single submitter MHC class I deficiency
  • c.38-18C>T Single submitter MHC class I deficiency
  • c.38-5G>A Single submitter MHC class I deficiency
  • c.469+18G>A Single submitter MHC class I deficiency
  • c.469+8G>C Single submitter MHC class I deficiency
  • c.470-15C>T Single submitter
  • c.868+11G>A Single submitter MHC class I deficiency
  • c.869-12C>T Single submitter MHC class I deficiency
  • c.869-15G>A Single submitter MHC class I deficiency
  • p.Ala15= Single submitter MHC class I deficiency
  • p.Ala219= Single submitter MHC class I deficiency
  • p.Ala23= Single submitter MHC class I deficiency
  • p.Ala235= Single submitter MHC class I deficiency
  • p.Ala304= Single submitter MHC class I deficiency
  • p.Ala33= Single submitter MHC class I deficiency
  • p.Ala381= Single submitter MHC class I deficiency
  • p.Ala396= Single submitter MHC class I deficiency
  • p.Ala72= Single submitter MHC class I deficiency
  • p.Arg169= Single submitter MHC class I deficiency
  • p.Arg303= Single submitter MHC class I deficiency
  • p.Arg333Gln Single submitter MHC class I deficiency
  • p.Arg347= Single submitter MHC class I deficiency
  • p.Arg81= Single submitter MHC class I deficiency
  • p.Asn114= Single submitter MHC class I deficiency
  • p.Asp59= Single submitter MHC class I deficiency
  • p.Asp61= Single submitter MHC class I deficiency
  • p.Gln142= Single submitter MHC class I deficiency
  • p.Glu205= Single submitter MHC class I deficiency
  • p.Glu401= Single submitter MHC class I deficiency
  • p.Gly13= Single submitter MHC class I deficiency
  • p.Gly325= Single submitter MHC class I deficiency
  • p.Gly85= Single submitter MHC class I deficiency
  • p.His365= Single submitter MHC class I deficiency
  • p.Leu124= Single submitter MHC class I deficiency
  • p.Leu138= Single submitter MHC class I deficiency
  • p.Leu139= Single submitter
  • p.Leu159= Single submitter MHC class I deficiency
  • p.Leu177= Single submitter MHC class I deficiency
  • p.Leu178= Single submitter MHC class I deficiency
  • p.Leu195= Single submitter MHC class I deficiency
  • p.Leu211= Single submitter MHC class I deficiency
  • p.Leu258= Single submitter MHC class I deficiency
  • p.Leu284= Single submitter MHC class I deficiency
  • p.Leu301= Single submitter MHC class I deficiency
  • p.Leu316Phe Single submitter MHC class I deficiency
  • p.Leu410Phe Single submitter MHC class I deficiency
  • p.Leu416= Single submitter MHC class I deficiency
  • p.Leu437= Single submitter MHC class I deficiency
  • p.Leu45= Single submitter MHC class I deficiency
  • p.Leu46= Single submitter MHC class I deficiency
  • p.Leu47= Single submitter MHC class I deficiency
  • p.Leu66= Single submitter MHC class I deficiency
  • p.Leu7= Single submitter MHC class I deficiency
  • p.Leu8= Single submitter MHC class I deficiency
  • p.Lys342= Single submitter MHC class I deficiency
  • p.Lys36= Single submitter MHC class I deficiency
  • p.Phe320= Single submitter
  • p.Pro100= Single submitter MHC class I deficiency
  • p.Pro116= Single submitter MHC class I deficiency
  • p.Pro186= Single submitter MHC class I deficiency
  • p.Pro187= Single submitter MHC class I deficiency
  • p.Pro22= Single submitter MHC class I deficiency
  • p.Pro249= Single submitter MHC class I deficiency
  • p.Pro292= Single submitter MHC class I deficiency
  • p.Pro311= Single submitter MHC class I deficiency
  • p.Pro390= Single submitter MHC class I deficiency
  • p.Pro51Gln Single submitter
  • p.Pro54= Single submitter MHC class I deficiency
  • p.Pro55= Single submitter MHC class I deficiency
  • p.Pro56= Single submitter MHC class I deficiency
  • p.Pro71= Single submitter MHC class I deficiency
  • p.Ser3= Single submitter MHC class I deficiency
  • p.Ser323= Single submitter MHC class I deficiency
  • p.Ser350= Single submitter MHC class I deficiency
  • p.Ser363= Single submitter MHC class I deficiency
  • p.Ser388= Single submitter MHC class I deficiency
  • p.Ser395= Single submitter MHC class I deficiency
  • p.Ser409= Single submitter MHC class I deficiency
  • p.Ser94= Single submitter MHC class I deficiency
  • p.Thr153= Single submitter MHC class I deficiency
  • p.Thr160= Single submitter MHC class I deficiency
  • p.Thr165= Single submitter MHC class I deficiency
  • p.Thr268= Single submitter MHC class I deficiency
  • p.Tyr380= Single submitter MHC class I deficiency
  • p.Val97= Single submitter MHC class I deficiency
  • p.Ala11= No assertion criteria TAPBP-related disorder
  • p.Leu296= No assertion criteria TAPBP-related disorder

Uncertain significance 225