TEK — 496 ClinVar variants

All ClinVar germline TEK variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 193 flagged for review →

21 Pathogenic · 7 Pathogenic/Likely pathogenic · 30 Likely pathogenic · 14 Conflicting · 112 Benign · 20 Benign/Likely benign · 80 Likely benign · 212 Uncertain significance

Full TEK gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 193

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 9

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 136

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 47

The independent predictors disagree with each other — read with care.

All TEK variants

Pathogenic 21

Pathogenic/Likely pathogenic 7

  • p.Arg915Cys Multiple submitters vascular malformation
  • p.Arg915His Multiple submitters vascular malformation
  • p.Arg918Cys Multiple submitters multiple cutaneous and mucosal venous malformations
  • p.Gln518Ter Multiple submitters glaucoma 3, primary infantile, B
  • p.Glu1109Ter Multiple submitters Segmental undergrowth associated with venous malformation without capillary component
  • p.Tyr897Asn Multiple submitters multiple cutaneous and mucosal venous malformations ⚠
  • p.Tyr897Ser Multiple submitters blue rubber bleb nevus ⚠

Likely pathogenic 30

Conflicting classifications of pathogenicity 14

  • p.Ala925Thr Single submitter glaucoma 3, primary congenital, E ⚠
  • p.Ala978Ser Single submitter Inborn genetic diseases ⚠
  • p.Arg849Gln Single submitter multiple cutaneous and mucosal venous malformations
  • p.Arg918His Single submitter vascular malformation ⚠
  • p.Asn464His Single submitter Inborn genetic diseases ⚠
  • p.Glu103Asp Single submitter glaucoma 3, primary infantile, B
  • p.Ile162Phe Single submitter multiple cutaneous and mucosal venous malformations ⚠
  • p.Ile463Val Single submitter Inborn genetic diseases ⚠
  • p.Lys294Asn Single submitter glaucoma 3, primary congenital, E ⚠
  • p.Lys89Asn Single submitter multiple cutaneous and mucosal venous malformations
  • p.Thr1037Ile Single submitter TEK-related disorder ⚠
  • p.Thr503Ala Single submitter multiple cutaneous and mucosal venous malformations ⚠
  • p.Thr693Ile Single submitter multiple cutaneous and mucosal venous malformations ⚠
  • p.Val20Ala Single submitter multiple cutaneous and mucosal venous malformations ⚠

Benign 112

Benign/Likely benign 20

  • c.3201-4G>A Multiple submitters multiple cutaneous and mucosal venous malformations
  • c.365-19G>A Multiple submitters
  • c.902-10C>T Multiple submitters multiple cutaneous and mucosal venous malformations
  • c.*5G>A Multiple submitters
  • c.*8C>T Multiple submitters
  • p.Ala1123= Multiple submitters multiple cutaneous and mucosal venous malformations
  • p.Ala226Val Multiple submitters multiple cutaneous and mucosal venous malformations
  • p.Ala724Thr Multiple submitters multiple cutaneous and mucosal venous malformations
  • p.Arg522Leu Multiple submitters multiple cutaneous and mucosal venous malformations
  • p.Asn438Ser Multiple submitters multiple cutaneous and mucosal venous malformations
  • p.Asn449Ser Multiple submitters multiple cutaneous and mucosal venous malformations
  • p.Glu1030= Multiple submitters multiple cutaneous and mucosal venous malformations
  • p.Gly743Ala Multiple submitters
  • p.His400Arg Multiple submitters multiple cutaneous and mucosal venous malformations
  • p.Leu1051= Multiple submitters multiple cutaneous and mucosal venous malformations
  • p.Leu634Phe Multiple submitters multiple cutaneous and mucosal venous malformations
  • p.Leu741= Multiple submitters
  • p.Thr1105= Multiple submitters multiple cutaneous and mucosal venous malformations
  • p.Thr1106= Multiple submitters
  • p.Thr250= Multiple submitters

Likely benign 80

Uncertain significance 212