TFAP2B — 196 ClinVar variants
All ClinVar germline TFAP2B variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 81 flagged for review →
16 Pathogenic · 1 Pathogenic/Likely pathogenic · 13 Likely pathogenic · 3 Conflicting · 18 Benign · 4 Benign/Likely benign · 44 Likely benign · 97 Uncertain significance
Full TFAP2B gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 81
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 3
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
TFAP2B p.Asn435Thr
Conflicting
Single submitter
Inborn genetic diseases
-
TFAP2B p.Ser188Gly
Conflicting
Single submitter
Inborn genetic diseases
-
TFAP2B p.Val224Ile
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 56
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
TFAP2B p.Pro205Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TFAP2B p.Ser277Trp
Uncertain significance
Multiple submitters
Char syndrome
-
TFAP2B p.Thr306Met
Uncertain significance
Multiple submitters
Char syndrome
- TFAP2B p.Thr60Asn Uncertain significance Multiple submitters
- TFAP2B p.Ala413Gly Uncertain significance Single submitter
- TFAP2B p.Arg256Pro Uncertain significance Single submitter
- TFAP2B p.Arg287Ser Uncertain significance Single submitter
-
TFAP2B p.Arg342Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Arg353Gly Uncertain significance Single submitter
-
TFAP2B p.Asn186Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
TFAP2B p.Asn434Lys
Uncertain significance
Single submitter
patent ductus arteriosus 2
- TFAP2B p.Asn435Ser Uncertain significance Single submitter
- TFAP2B p.Asp136Glu Uncertain significance Single submitter
- TFAP2B p.Asp369Asn Uncertain significance Single submitter
-
TFAP2B p.Asp369His
Uncertain significance
Single submitter
Char syndrome
-
TFAP2B p.Asp7Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Cys231Arg Uncertain significance Single submitter
- TFAP2B p.Gln131His Uncertain significance Single submitter
- TFAP2B p.Gln343Glu Uncertain significance Single submitter
-
TFAP2B p.Gln42His
Uncertain significance
Single submitter
Inborn genetic diseases
-
TFAP2B p.Glu289Gln
Uncertain significance
Single submitter
Char syndrome
-
TFAP2B p.Glu328Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Glu366Ala Uncertain significance Single submitter
-
TFAP2B p.Glu423Gln
Uncertain significance
Single submitter
TFAP2B-related disorder
-
TFAP2B p.Glu445Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Gly157Ser Uncertain significance Single submitter
- TFAP2B p.Gly170Ser Uncertain significance Single submitter
- TFAP2B p.Gly189Ser Uncertain significance Single submitter
-
TFAP2B p.Gly269Ser
Uncertain significance
Single submitter
Char syndrome
- TFAP2B p.Gly324Ala Uncertain significance Single submitter
-
TFAP2B p.His458Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
TFAP2B p.Ile25Met
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Ile291Thr Uncertain significance Single submitter
- TFAP2B p.Ile378Thr Uncertain significance Single submitter
-
TFAP2B p.Leu219Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
TFAP2B p.Leu350Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
TFAP2B p.Leu421Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
TFAP2B p.Lys278Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Lys430Met Uncertain significance Single submitter
-
TFAP2B p.Lys460Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
TFAP2B p.Phe323Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Phe398Ser Uncertain significance Single submitter
-
TFAP2B p.Pro130Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Pro137Ser Uncertain significance Single submitter
-
TFAP2B p.Pro259Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Pro34Ser Uncertain significance Single submitter
-
TFAP2B p.Pro72Ser
Uncertain significance
Single submitter
Char syndrome
-
TFAP2B p.Ser165Asn
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Ser188Asn Uncertain significance Single submitter
-
TFAP2B p.Ser266Pro
Uncertain significance
Single submitter
Char syndrome
- TFAP2B p.Val182Ala Uncertain significance Single submitter
- TFAP2B p.Val253Phe Uncertain significance Single submitter
-
TFAP2B p.Val271Leu
Uncertain significance
Single submitter
Char syndrome
- TFAP2B p.Val33Ile Uncertain significance Single submitter
-
TFAP2B p.Val89Ile
Uncertain significance
Single submitter
Char syndrome
- TFAP2B p.Val305Ala Uncertain significance No assertion criteria
Predictors split 22
The independent predictors disagree with each other — read with care.
-
TFAP2B p.Asp31Gly
Uncertain significance
Multiple submitters
Char syndrome
-
TFAP2B p.Ala333Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
TFAP2B p.Arg29Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
TFAP2B p.Arg39Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Arg39Pro Uncertain significance Single submitter
-
TFAP2B p.Asp136His
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Asp140His Uncertain significance Single submitter
-
TFAP2B p.Asp194Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
TFAP2B p.Asp28Gly
Uncertain significance
Single submitter
patent ductus arteriosus 2
- TFAP2B p.Glu456Lys Uncertain significance Single submitter
-
TFAP2B p.Gly134Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
TFAP2B p.His88Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
TFAP2B p.Lys454Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Pro347Leu Uncertain significance Single submitter
- TFAP2B p.Pro56Gln Uncertain significance Single submitter
- TFAP2B p.Pro61Leu Uncertain significance Single submitter
- TFAP2B p.Pro67Ser Uncertain significance Single submitter
-
TFAP2B p.Pro68Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- TFAP2B p.Ser381Arg Uncertain significance Single submitter
- TFAP2B p.Tyr86Asn Uncertain significance Single submitter
-
TFAP2B p.Met428Thr
Uncertain significance
No assertion criteria
TFAP2B-related disorder
-
TFAP2B p.Pro73Arg
Pathogenic
No assertion criteria
Char syndrome
All TFAP2B variants
Pathogenic 16
- c.601+1G>A Single submitter Inborn genetic diseases
- c.602-5_606del Single submitter chronic intestinal pseudoobstruction
- p.Ala275Asp Single submitter Char syndrome
- p.Arg285Ter Single submitter
- p.Arg300Cys Single submitter Char syndrome
- p.Gln110Ter Single submitter
- p.Gly217fs Single submitter Char syndrome
- p.Tyr51Ter Single submitter Inborn genetic diseases
- p.Tyr74fs Single submitter Inborn genetic diseases
- p.Tyr93fs Single submitter
- c.541-2A>T No assertion criteria patent ductus arteriosus 2
- c.601+5G>A No assertion criteria patent ductus arteriosus 2
- p.Arg236Cys No assertion criteria Char syndrome
- p.Arg236Ser No assertion criteria Char syndrome
- p.Pro147fs No assertion criteria patent ductus arteriosus 2
- p.Pro73Arg No assertion criteria Char syndrome ⚠
Pathogenic/Likely pathogenic 1
- p.Arg285Gln Multiple submitters Char syndrome
Likely pathogenic 13
- p.Arg236His Multiple submitters TFAP2B-related disorder
- p.Arg256Gln Single submitter TFAP2B-related congenital heart disease spectrum disorder
- p.Arg300His Single submitter
- p.Cys327Ter Single submitter Char syndrome
- p.Glu286Ter Single submitter
- p.Lys199Ter Single submitter
- p.Ser207Ter Single submitter
- p.Tyr22Ter Single submitter patent ductus arteriosus 2
- p.Tyr79fs Single submitter TFAP2B-related disorder
- c.601+2T>A No assertion criteria craniosynostosis
- p.Arg382Ter No assertion criteria craniosynostosis
- p.Lys276Arg No assertion criteria craniosynostosis
- p.Met1Ile No assertion criteria craniosynostosis
Conflicting classifications of pathogenicity 3
- p.Asn435Thr Single submitter Inborn genetic diseases ⚠
- p.Ser188Gly Single submitter Inborn genetic diseases ⚠
- p.Val224Ile Single submitter Inborn genetic diseases ⚠
Benign 18
- c.540+14A>G Multiple submitters
- c.540+7ACAA[5] Multiple submitters Char syndrome
- c.*10A>T Multiple submitters
- c.1083-308T>C Single submitter
- c.540+10A>G Single submitter
- c.540+62G>C Single submitter
- c.601+242A>G Single submitter
- c.940+136T>G Single submitter
- c.*136del Single submitter
- c.*136T>A Single submitter
- c.*178C>T Single submitter
- c.*910_*911insC Single submitter
- c.*910A>C Single submitter
- c.*911del Single submitter
- c.*912CA[6] Single submitter
- c.*912del Single submitter
- p.Asp84= Single submitter
- p.Leu387= Single submitter
Benign/Likely benign 4
- c.540+7ACAA[4] Multiple submitters
- c.540+7ACAA[7] Multiple submitters
- p.Thr368= Multiple submitters
- p.Val336Ile Multiple submitters
Likely benign 44
- p.Ala333Ser Multiple submitters
- p.Arg39= Multiple submitters
- c.1082+16T>C Single submitter
- c.601+15C>T Single submitter
- c.81+9A>G Single submitter
- c.82-10C>G Single submitter
- c.82-4C>A Single submitter
- c.821+11C>A Single submitter
- c.821+13C>T Single submitter
- c.821+15AAAAAC[2] Single submitter
- c.821+26_821+37del Single submitter
- c.821+7_821+8del Single submitter
- c.821+9A>G Single submitter
- c.940+12G>A Single submitter
- c.*15AAG[1] Single submitter
- p.Ala127= Single submitter
- p.Ala335= Single submitter
- p.Ala372= Single submitter
- p.Arg138= Single submitter
- p.Arg285= Single submitter
- p.Asn439= Single submitter
- p.Asp159= Single submitter
- p.Gly107= Single submitter
- p.Gly298= Single submitter
- p.His30= Single submitter
- p.Leu122= Single submitter
- p.Leu16= Single submitter
- p.Leu240= Single submitter
- p.Leu267= Single submitter
- p.Leu288= Single submitter
- p.Leu395= Single submitter
- p.Leu40= Single submitter
- p.Leu414= Single submitter
- p.Lys354= Single submitter
- p.Pro174= Single submitter
- p.Pro377= Single submitter
- p.Pro76= Single submitter
- p.Ser143= Single submitter
- p.Ser196= Single submitter
- p.Thr306= Single submitter
- p.Thr415= Single submitter
- p.Thr422= Single submitter
- p.Val17= Single submitter
- p.Val179= Single submitter
Uncertain significance 97
- c.541-3_541-2del Multiple submitters Char syndrome
- p.Ala54Gly Multiple submitters Inborn genetic diseases
- p.Asp31Gly Multiple submitters Char syndrome ⚠
- p.Asp346Glu Multiple submitters Inborn genetic diseases
- p.Pro205Ser Multiple submitters Inborn genetic diseases ⚠
- p.Ser277Trp Multiple submitters Char syndrome ⚠
- p.Thr306Met Multiple submitters Char syndrome ⚠
- p.Thr60Asn Multiple submitters ⚠
- c.540+5C>T Single submitter
- c.540+7ACAA[3] Single submitter Char syndrome
- c.542_545delCAGT Single submitter
- c.*135_*136del Single submitter
- p.Ala333Thr Single submitter Inborn genetic diseases ⚠
- p.Ala413Gly Single submitter ⚠
- p.Arg256Pro Single submitter ⚠
- p.Arg287Ser Single submitter ⚠
- p.Arg29Leu Single submitter Inborn genetic diseases ⚠
- p.Arg342Gln Single submitter Inborn genetic diseases ⚠
- p.Arg353Gly Single submitter ⚠
- p.Arg39Leu Single submitter Inborn genetic diseases ⚠
- p.Arg39Pro Single submitter ⚠
- p.Asn186Ser Single submitter Inborn genetic diseases ⚠
- p.Asn214Asp Single submitter
- p.Asn434Lys Single submitter patent ductus arteriosus 2 ⚠
- p.Asn435Ser Single submitter ⚠
- p.Asp136Glu Single submitter ⚠
- p.Asp136His Single submitter Inborn genetic diseases ⚠
- p.Asp140His Single submitter ⚠
- p.Asp194Glu Single submitter Inborn genetic diseases ⚠
- p.Asp28Gly Single submitter patent ductus arteriosus 2 ⚠
- p.Asp369Asn Single submitter ⚠
- p.Asp369His Single submitter Char syndrome ⚠
- p.Asp7Ala Single submitter Inborn genetic diseases ⚠
- p.Cys231Arg Single submitter ⚠
- p.Gln131His Single submitter ⚠
- p.Gln180= Single submitter
- p.Gln343Glu Single submitter ⚠
- p.Gln42His Single submitter Inborn genetic diseases ⚠
- p.Glu289Gln Single submitter Char syndrome ⚠
- p.Glu328Gln Single submitter Inborn genetic diseases ⚠
- p.Glu366Ala Single submitter ⚠
- p.Glu423Gln Single submitter TFAP2B-related disorder ⚠
- p.Glu445Asp Single submitter Inborn genetic diseases ⚠
- p.Glu445fs Single submitter
- p.Glu456Lys Single submitter ⚠
- p.Gly134Val Single submitter Inborn genetic diseases ⚠
- p.Gly157Ser Single submitter ⚠
- p.Gly170Ser Single submitter ⚠
- p.Gly189Ser Single submitter ⚠
- p.Gly221= Single submitter
- p.Gly269Ser Single submitter Char syndrome ⚠
- p.Gly324Ala Single submitter ⚠
- p.His458Gln Single submitter Inborn genetic diseases ⚠
- p.His88Gln Single submitter Inborn genetic diseases ⚠
- p.His99Gln Single submitter
- p.Ile25Met Single submitter Inborn genetic diseases ⚠
- p.Ile291Thr Single submitter ⚠
- p.Ile326Leu Single submitter
- p.Ile378Thr Single submitter ⚠
- p.Leu193Ser Single submitter
- p.Leu219Met Single submitter Inborn genetic diseases ⚠
- p.Leu350Met Single submitter Inborn genetic diseases ⚠
- p.Leu421Phe Single submitter Inborn genetic diseases ⚠
- p.Leu77Phe Single submitter Inborn genetic diseases
- p.Lys278Arg Single submitter Inborn genetic diseases ⚠
- p.Lys430Met Single submitter ⚠
- p.Lys454Glu Single submitter Inborn genetic diseases ⚠
- p.Lys460Glu Single submitter Inborn genetic diseases ⚠
- p.Phe323Leu Single submitter Inborn genetic diseases ⚠
- p.Phe398Ser Single submitter ⚠
- p.Pro130Ser Single submitter Inborn genetic diseases ⚠
- p.Pro137Ser Single submitter ⚠
- p.Pro259Ser Single submitter Inborn genetic diseases ⚠
- p.Pro347Leu Single submitter ⚠
- p.Pro34Ser Single submitter ⚠
- p.Pro56Gln Single submitter ⚠
- p.Pro61Leu Single submitter ⚠
- p.Pro61Thr Single submitter
- p.Pro67Ser Single submitter ⚠
- p.Pro68Leu Single submitter Inborn genetic diseases ⚠
- p.Pro72Ser Single submitter Char syndrome ⚠
- p.Pro76Leu Single submitter
- p.Ser165Asn Single submitter Inborn genetic diseases ⚠
- p.Ser188Asn Single submitter ⚠
- p.Ser266Pro Single submitter Char syndrome ⚠
- p.Ser381Arg Single submitter ⚠
- p.Tyr86Asn Single submitter ⚠
- p.Val149Leu Single submitter Inborn genetic diseases
- p.Val182Ala Single submitter ⚠
- p.Val197Ile Single submitter Inborn genetic diseases
- p.Val253Phe Single submitter ⚠
- p.Val271Leu Single submitter Char syndrome ⚠
- p.Val33Ile Single submitter ⚠
- p.Val89Ile Single submitter Char syndrome ⚠
- p.Val89Leu Single submitter Inborn genetic diseases
- p.Met428Thr No assertion criteria TFAP2B-related disorder ⚠
- p.Val305Ala No assertion criteria ⚠