TMEM216 — 302 ClinVar variants

All ClinVar germline TMEM216 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 61 flagged for review →

17 Pathogenic · 7 Pathogenic/Likely pathogenic · 23 Likely pathogenic · 22 Conflicting · 8 Benign · 5 Benign/Likely benign · 115 Likely benign · 105 Uncertain significance

Full TMEM216 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 61

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 7

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 41

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

All TMEM216 variants

Pathogenic 17

Pathogenic/Likely pathogenic 7

  • p.Arg73His Multiple submitters Meckel syndrome, type 2
  • p.Leu23fs Multiple submitters Joubert syndrome
  • p.Leu64fs Multiple submitters Joubert syndrome 2
  • p.Trp29Ter Multiple submitters TMEM216-related disorder
  • p.Tyr66fs Multiple submitters Joubert syndrome
  • p.Gly77Ala No assertion criteria Meckel syndrome, type 2 ⚠
  • p.Leu114Arg No assertion criteria Meckel syndrome, type 2

Likely pathogenic 23

Conflicting classifications of pathogenicity 22

Benign 8

Benign/Likely benign 5

  • c.35-17C>T Multiple submitters Meckel syndrome, type 2
  • c.-24C>G Multiple submitters Meckel syndrome, type 2
  • c.*444T>C Multiple submitters Joubert syndrome 2
  • p.Arg85= Multiple submitters Meckel syndrome, type 2
  • p.Ile72= Multiple submitters Meckel syndrome, type 2

Likely benign 115

Uncertain significance 105