TNC — 672 ClinVar variants

All ClinVar germline TNC variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 354 flagged for review →

3 Pathogenic · 3 Likely pathogenic · 27 Conflicting · 110 Benign · 21 Benign/Likely benign · 166 Likely benign · 342 Uncertain significance

Full TNC gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 354

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 4

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 22

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 237

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 237

Predictors split 91

The independent predictors disagree with each other — read with care.

All TNC variants

Pathogenic 3

  • c.5512+1G>A Single submitter autosomal dominant nonsyndromic hearing loss 56
  • p.Gly1749= No assertion criteria autosomal dominant nonsyndromic hearing loss 56
  • p.Thr1796Ser No assertion criteria autosomal dominant nonsyndromic hearing loss 56 ⚠

Likely pathogenic 3

Conflicting classifications of pathogenicity 27

Benign 110

Benign/Likely benign 21

  • p.Arg1118Gln Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Arg1118Trp Multiple submitters
  • p.Arg1698Pro Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Arg1741= Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Arg448Gly Multiple submitters autosomal dominant nonsyndromic hearing loss 56 ⚠
  • p.Arg503Lys Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Arg707Thr Multiple submitters autosomal dominant nonsyndromic hearing loss 56 ⚠
  • p.Asn441Ser Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Cys315= Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Cys573= Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Glu21Lys Multiple submitters autosomal dominant nonsyndromic hearing loss 56 ⚠
  • p.Gly145Val Multiple submitters
  • p.Gly210Ser Multiple submitters autosomal dominant nonsyndromic hearing loss 56 ⚠
  • p.His52= Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Ile830= Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Ile874Val Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Leu2002= Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Leu25= Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Lys32= Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Ser1125Arg Multiple submitters autosomal dominant nonsyndromic hearing loss 56
  • p.Val2167Ile Multiple submitters autosomal dominant nonsyndromic hearing loss 56

Likely benign 166

Uncertain significance 342

Showing the top 300 by review status; the full set is in the sitemap.