TOR1A — 243 ClinVar variants

All ClinVar germline TOR1A variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 102 flagged for review →

5 Pathogenic · 2 Pathogenic/Likely pathogenic · 7 Likely pathogenic · 10 Conflicting · 20 Benign · 6 Benign/Likely benign · 58 Likely benign · 135 Uncertain significance

Full TOR1A gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 102

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 3

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 77

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 22

The independent predictors disagree with each other — read with care.

All TOR1A variants

Pathogenic 5

  • p.Gln72Ter Single submitter early-onset generalized limb-onset dystonia
  • p.Glu117_Asn118delinsTer Single submitter arthrogryposis multiplex congenita 5
  • p.Lys320Glu Single submitter early-onset generalized limb-onset dystonia
  • p.Trp154Ter Single submitter early-onset generalized limb-onset dystonia
  • p.Gly318Ser No assertion criteria arthrogryposis multiplex congenita 5

Pathogenic/Likely pathogenic 2

  • p.Arg288Ter Multiple submitters TOR1A-related disorder
  • p.Glu303del Multiple submitters early-onset generalized limb-onset dystonia

Likely pathogenic 7

  • p.Arg282Ter Multiple submitters arthrogryposis multiplex congenita 5
  • c.621-2A>G Single submitter arthrogryposis multiplex congenita 5
  • c.748+1G>A Single submitter TOR1A-related disorder
  • p.Asp264fs Single submitter arthrogryposis multiplex congenita 5
  • p.Cys162Ter Single submitter arthrogryposis multiplex congenita 5
  • p.Gln286Ter Single submitter
  • p.Leu96fs Single submitter arthrogryposis multiplex congenita 5

Conflicting classifications of pathogenicity 10

Benign 20

  • c.178+269A>G Multiple submitters
  • c.748+113C>G Multiple submitters
  • c.*191G>T Multiple submitters dystonic disorder
  • c.*214C>G Multiple submitters early-onset generalized limb-onset dystonia
  • c.*414G>T Multiple submitters early-onset generalized limb-onset dystonia
  • c.*416T>G Multiple submitters early-onset generalized limb-onset dystonia
  • c.*454T>A Multiple submitters early-onset generalized limb-onset dystonia
  • p.Ala82= Multiple submitters dystonic disorder
  • p.Asp216His Multiple submitters early-onset generalized limb-onset dystonia
  • c.178+192CTGGGG[2] Single submitter
  • c.179-231T>A Single submitter
  • c.445-12dup Single submitter dystonic disorder
  • c.445-8dup Single submitter dystonic disorder
  • c.749-164G>T Single submitter
  • c.749-179dup Single submitter
  • c.*1002C>T Single submitter early-onset generalized limb-onset dystonia
  • c.*831C>T Single submitter early-onset generalized limb-onset dystonia
  • c.*948C>T Single submitter early-onset generalized limb-onset dystonia
  • c.*961T>A Single submitter early-onset generalized limb-onset dystonia
  • p.Glu273= Single submitter dystonic disorder

Benign/Likely benign 6

Likely benign 58

Uncertain significance 135