TPM2 — 369 ClinVar variants

All ClinVar germline TPM2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 84 flagged for review →

14 Pathogenic · 6 Pathogenic/Likely pathogenic · 23 Likely pathogenic · 17 Conflicting · 22 Benign · 10 Benign/Likely benign · 142 Likely benign · 135 Uncertain significance

Full TPM2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 84

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 4

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 67

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

All TPM2 variants

Pathogenic 14

Pathogenic/Likely pathogenic 6

  • p.Ala155Thr Multiple submitters TPM2-related disorder
  • p.Ala74fs Multiple submitters arthrogryposis, distal, type 1A
  • p.Gln24Ter Multiple submitters arthrogryposis, distal, type 1A
  • p.Glu117Lys Multiple submitters Inborn genetic diseases
  • p.Glu187Lys Multiple submitters TPM2-related disorder
  • p.Tyr261Cys Multiple submitters TPM2-related disorder

Likely pathogenic 23

Conflicting classifications of pathogenicity 17

  • c.241-7C>A Single submitter TPM2-related disorder
  • c.374+9G>C Single submitter arthrogryposis, distal, type 1A
  • c.564-9C>T Single submitter arthrogryposis, distal, type 1A
  • c.773-10_773-9insCG Single submitter arthrogryposis, distal, type 1A
  • c.773-3del Single submitter arthrogryposis, distal, type 1A
  • c.773-9_773-8insCA Single submitter arthrogryposis, distal, type 1A
  • c.-10C>A Single submitter arthrogryposis, distal, type 1A
  • c.*25A>C Single submitter arthrogryposis, distal, type 1A
  • p.Ala186= Single submitter congenital myopathy 23
  • p.Ala242= Single submitter arthrogryposis, distal, type 1A
  • p.Ala27= Single submitter arthrogryposis, distal, type 1A
  • p.Arg90His Single submitter congenital myopathy 23 ⚠
  • p.Asp2Val Single submitter TPM2-related disorder ⚠
  • p.Asp80= Single submitter arthrogryposis, distal, type 1A
  • p.Gln93Arg Single submitter ⚠
  • p.Lys77Arg Single submitter Inborn genetic diseases ⚠
  • p.Ser61Pro Single submitter arthrogryposis, distal, type 1A ⚠

Benign 22

Benign/Likely benign 10

Likely benign 142

  • c.114+10G>A Multiple submitters arthrogryposis, distal, type 1A
  • c.375-13C>T Multiple submitters arthrogryposis, distal, type 1A
  • c.564-18_564-17insA Multiple submitters arthrogryposis, distal, type 1A
  • c.564-18G>C Multiple submitters arthrogryposis, distal, type 1A
  • c.640-34C>T Multiple submitters
  • c.772+278T>C Multiple submitters
  • c.773-137A>G Multiple submitters
  • p.Ala116= Multiple submitters arthrogryposis, distal, type 1A
  • p.Ala211= Multiple submitters arthrogryposis, distal, type 1A
  • p.Glu75= Multiple submitters arthrogryposis, distal, type 1A
  • p.Ile253= Multiple submitters arthrogryposis, distal, type 1A
  • p.Leu99= Multiple submitters arthrogryposis, distal, type 1A
  • p.Thr282= Multiple submitters arthrogryposis, distal, type 1A
  • c.114+9C>T Single submitter arthrogryposis, distal, type 1A
  • c.115-13C>T Single submitter arthrogryposis, distal, type 1A
  • c.115-14C>A Single submitter arthrogryposis, distal, type 1A
  • c.115-16G>A Single submitter arthrogryposis, distal, type 1A
  • c.115-5C>T Single submitter arthrogryposis, distal, type 1A
  • c.240+11A>T Single submitter arthrogryposis, distal, type 1A
  • c.240+15G>T Single submitter arthrogryposis, distal, type 1A
  • c.240+161A>G Single submitter
  • c.240+17G>A Single submitter arthrogryposis, distal, type 1A
  • c.241-14C>T Single submitter arthrogryposis, distal, type 1A
  • c.241-5C>T Single submitter arthrogryposis, distal, type 1A
  • c.374+14T>C Single submitter arthrogryposis, distal, type 1A
  • c.374+15C>T Single submitter arthrogryposis, distal, type 1A
  • c.374+16G>A Single submitter arthrogryposis, distal, type 1A
  • c.374+16G>C Single submitter arthrogryposis, distal, type 1A
  • c.375-11C>T Single submitter arthrogryposis, distal, type 1A
  • c.375-15C>T Single submitter arthrogryposis, distal, type 1A
  • c.375-37G>A Single submitter
  • c.492+37C>T Single submitter
  • c.492+9C>T Single submitter arthrogryposis, distal, type 1A
  • c.493-10C>T Single submitter arthrogryposis, distal, type 1A
  • c.493-20C>G Single submitter arthrogryposis, distal, type 1A
  • c.493-22CT[2] Single submitter arthrogryposis, distal, type 1A
  • c.493-43G>C Single submitter
  • c.493-7C>A Single submitter
  • c.493-7C>T Single submitter arthrogryposis, distal, type 1A
  • c.563+109dup Single submitter
  • c.563+10C>A Single submitter arthrogryposis, distal, type 1A
  • c.563+11_563+12insGTA Single submitter arthrogryposis, distal, type 1A
  • c.563+12C>T Single submitter arthrogryposis, distal, type 1A
  • c.563+13G>A Single submitter arthrogryposis, distal, type 1A
  • c.563+13G>C Single submitter arthrogryposis, distal, type 1A
  • c.563+13G>T Single submitter arthrogryposis, distal, type 1A
  • c.563+14G>T Single submitter arthrogryposis, distal, type 1A
  • c.563+7A>T Single submitter
  • c.564-10C>T Single submitter arthrogryposis, distal, type 1A
  • c.564-13A>C Single submitter arthrogryposis, distal, type 1A
  • c.564-18G>A Single submitter arthrogryposis, distal, type 1A
  • c.564-19_564-18insT Single submitter arthrogryposis, distal, type 1A
  • c.564-19C>G Single submitter arthrogryposis, distal, type 1A
  • c.564-19C>T Single submitter arthrogryposis, distal, type 1A
  • c.564-20_564-19insT Single submitter arthrogryposis, distal, type 1A
  • c.564-20C>T Single submitter arthrogryposis, distal, type 1A
  • c.564-7C>T Single submitter arthrogryposis, distal, type 1A
  • c.564-9C>A Single submitter arthrogryposis, distal, type 1A
  • c.639+10A>G Single submitter arthrogryposis, distal, type 1A
  • c.639+16G>A Single submitter arthrogryposis, distal, type 1A
  • c.639+33G>T Single submitter
  • c.640-15G>A Single submitter arthrogryposis, distal, type 1A
  • c.640-17G>C Single submitter arthrogryposis, distal, type 1A
  • c.640-18dup Single submitter arthrogryposis, distal, type 1A
  • c.640-19G>A Single submitter arthrogryposis, distal, type 1A
  • c.640-19GT[6] Single submitter arthrogryposis, distal, type 1A
  • c.640-20C>A Single submitter arthrogryposis, distal, type 1A
  • c.640-9C>T Single submitter arthrogryposis, distal, type 1A
  • c.702+15C>G Single submitter arthrogryposis, distal, type 1A
  • c.702+17A>C Single submitter arthrogryposis, distal, type 1A
  • c.702+60C>T Single submitter
  • c.703-3dup Single submitter arthrogryposis, distal, type 1A
  • c.703-5C>T Single submitter arthrogryposis, distal, type 1A
  • c.703-9T>C Single submitter arthrogryposis, distal, type 1A
  • c.773-10_773-9insG Single submitter arthrogryposis, distal, type 1A
  • c.773-11A>G Single submitter arthrogryposis, distal, type 1A
  • c.773-11dup Single submitter arthrogryposis, distal, type 1A
  • c.773-140C>T Single submitter
  • c.773-14T>C Single submitter arthrogryposis, distal, type 1A
  • c.773-15C>T Single submitter arthrogryposis, distal, type 1A
  • c.773-187C>T Single submitter
  • c.773-19C>T Single submitter arthrogryposis, distal, type 1A
  • c.773-5_773-4insT Single submitter arthrogryposis, distal, type 1A
  • c.773-607C>T Single submitter
  • c.773-7_773-6insCG Single submitter arthrogryposis, distal, type 1A
  • c.773-727G>A Single submitter
  • c.773-9_773-8insA Single submitter arthrogryposis, distal, type 1A
  • c.773-9_773-8insG Single submitter arthrogryposis, distal, type 1A
  • c.773-9C>A Single submitter arthrogryposis, distal, type 1A
  • c.773-9C>G Single submitter arthrogryposis, distal, type 1A
  • c.-4A>G Single submitter
  • c.-544G>A Single submitter
  • p.Ala102= Single submitter arthrogryposis, distal, type 1A
  • p.Ala107= Single submitter arthrogryposis, distal, type 1A
  • p.Ala119= Single submitter arthrogryposis, distal, type 1A
  • p.Ala209= Single submitter arthrogryposis, distal, type 1A
  • p.Ala22= Single submitter arthrogryposis, distal, type 1A
  • p.Ala25= Single submitter arthrogryposis, distal, type 1A
  • p.Ala32= Single submitter arthrogryposis, distal, type 1A
  • p.Ala78= Single submitter arthrogryposis, distal, type 1A
  • p.Arg133= Single submitter arthrogryposis, distal, type 1A
  • p.Arg91= Single submitter arthrogryposis, distal, type 1A
  • p.Asp255= Single submitter
  • p.Gln144= Single submitter arthrogryposis, distal, type 1A
  • p.Glu142= Single submitter arthrogryposis, distal, type 1A
  • p.Glu150= Single submitter arthrogryposis, distal, type 1A
  • p.Glu196= Single submitter arthrogryposis, distal, type 1A
  • p.Glu222= Single submitter arthrogryposis, distal, type 1A
  • p.Glu223= Single submitter arthrogryposis, distal, type 1A
  • p.Glu224= Single submitter arthrogryposis, distal, type 1A
  • p.Glu23= Single submitter arthrogryposis, distal, type 1A
  • p.Glu240= Single submitter arthrogryposis, distal, type 1A
  • p.Glu243= Single submitter arthrogryposis, distal, type 1A
  • p.Glu272= Single submitter arthrogryposis, distal, type 1A
  • p.Ile154= Single submitter arthrogryposis, distal, type 1A
  • p.Ile225Thr Single submitter arthrogryposis, distal, type 1A
  • p.Leu106= Single submitter arthrogryposis, distal, type 1A
  • p.Leu169= Single submitter arthrogryposis, distal, type 1A
  • p.Leu197= Single submitter arthrogryposis, distal, type 1A
  • p.Leu207= Single submitter arthrogryposis, distal, type 1A
  • p.Leu249= Single submitter arthrogryposis, distal, type 1A
  • p.Leu278= Single submitter arthrogryposis, distal, type 1A
  • p.Leu284= Single submitter
  • p.Leu94= Single submitter arthrogryposis, distal, type 1A
  • p.Lys6= Single submitter arthrogryposis, distal, type 1A
  • p.Lys76= Single submitter arthrogryposis, distal, type 1A
  • p.Ser179= Single submitter arthrogryposis, distal, type 1A
  • p.Ser188Thr Single submitter congenital myopathy 23
  • p.Ser206= Single submitter arthrogryposis, distal, type 1A
  • p.Ser215= Single submitter arthrogryposis, distal, type 1A
  • p.Ser245= Single submitter arthrogryposis, distal, type 1A
  • p.Ser63= Single submitter arthrogryposis, distal, type 1A
  • p.Ser87= Single submitter arthrogryposis, distal, type 1A
  • p.Tyr221= Single submitter arthrogryposis, distal, type 1A
  • p.Tyr267= Single submitter arthrogryposis, distal, type 1A
  • p.Tyr60= Single submitter arthrogryposis, distal, type 1A
  • p.Val165= Single submitter arthrogryposis, distal, type 1A
  • p.Val185= Single submitter arthrogryposis, distal, type 1A
  • p.Val268= Single submitter
  • p.Val64= Single submitter arthrogryposis, distal, type 1A
  • c.563+175C>T No assertion criteria TPM2-related disorder
  • c.773-9_773-8insCG No assertion criteria TPM2-related disorder

Uncertain significance 135