TPO — 815 ClinVar variants

All ClinVar germline TPO variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 169 flagged for review →

54 Pathogenic · 14 Pathogenic/Likely pathogenic · 50 Likely pathogenic · 47 Conflicting · 46 Benign · 20 Benign/Likely benign · 416 Likely benign · 168 Uncertain significance

Full TPO gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 169

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 8

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 15

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 118

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 28

The independent predictors disagree with each other — read with care.

All TPO variants

Pathogenic 54

Pathogenic/Likely pathogenic 14

  • c.1768+1G>A Multiple submitters
  • p.Arg648Gln Multiple submitters thyroid dyshormonogenesis 2A ⚠
  • p.Asn129fs Multiple submitters thyroid dyshormonogenesis 2A
  • p.Asp224del Multiple submitters thyroid dyshormonogenesis 2A
  • p.Cys808fs Multiple submitters TPO-related disorder
  • p.Cys896Ter Multiple submitters thyroid dyshormonogenesis 2A
  • p.Gln660Glu Multiple submitters congenital hypothyroidism
  • p.Gln682Ter Multiple submitters thyroid dyshormonogenesis 2A
  • p.Glu347Ter Multiple submitters thyroid dyshormonogenesis 2A
  • p.Glu799Lys Multiple submitters thyroid dyshormonogenesis 2A
  • p.Gly860Arg Multiple submitters thyroid dyshormonogenesis 2A
  • p.Phe714fs Multiple submitters thyroid dyshormonogenesis 2A
  • p.Trp873Ter Multiple submitters thyroid dyshormonogenesis 2A
  • p.Tyr772fs Multiple submitters thyroid dyshormonogenesis 2A

Likely pathogenic 50

Conflicting classifications of pathogenicity 47

  • c.2007-12C>T Single submitter thyroid dyshormonogenesis 2A
  • c.2007-5T>C Single submitter thyroid dyshormonogenesis 2A
  • c.2386+8C>G Single submitter thyroid dyshormonogenesis 2A
  • c.2387-12T>C Single submitter thyroid dyshormonogenesis 2A
  • c.2749-4G>A Single submitter thyroid dyshormonogenesis 2A
  • c.612+15C>T Single submitter thyroid dyshormonogenesis 2A
  • c.820-15C>T Single submitter thyroid dyshormonogenesis 2A
  • c.94+13C>T Single submitter thyroid dyshormonogenesis 2A
  • c.95-14A>G Single submitter thyroid dyshormonogenesis 2A
  • c.95-4G>A Single submitter thyroid dyshormonogenesis 2A
  • c.*63dup Single submitter thyroid dyshormonogenesis 2A
  • p.Ala373= Single submitter thyroid dyshormonogenesis 2A
  • p.Ala432Thr Single submitter Inborn genetic diseases ⚠
  • p.Ala495Thr Single submitter thyroid dyshormonogenesis 2A ⚠
  • p.Ala812= Single submitter thyroid dyshormonogenesis 2A
  • p.Ala901= Single submitter thyroid dyshormonogenesis 2A
  • p.Ala909fs Single submitter
  • p.Arg361Leu Single submitter thyroid dyshormonogenesis 2A ⚠
  • p.Arg438His Single submitter thyroid dyshormonogenesis 2A ⚠
  • p.Arg491His Single submitter congenital hypothyroidism ⚠
  • p.Arg584Gln Single submitter thyroid dyshormonogenesis 2A ⚠
  • p.Arg584Trp Single submitter thyroid dyshormonogenesis 2A ⚠
  • p.Arg769Trp Single submitter thyroid dyshormonogenesis 2A ⚠
  • p.Arg846= Single submitter thyroid dyshormonogenesis 2A
  • p.Arg846Trp Single submitter thyroid dyshormonogenesis 2A ⚠
  • p.Arg908fs Single submitter thyroid dyshormonogenesis 2A
  • p.Asp633= Single submitter thyroid dyshormonogenesis 2A
  • p.Asp833= Single submitter thyroid dyshormonogenesis 2A
  • p.Gln738Glu Single submitter Inborn genetic diseases ⚠
  • p.Gly167= Single submitter thyroid dyshormonogenesis 2A
  • p.Gly667Ser Single submitter thyroid dyshormonogenesis 2A ⚠
  • p.Gly842Arg Single submitter thyroid dyshormonogenesis 2A ⚠
  • p.His353= Single submitter thyroid dyshormonogenesis 2A
  • p.His586= Single submitter thyroid dyshormonogenesis 2A
  • p.Ile497= Single submitter thyroid dyshormonogenesis 2A
  • p.Ile859= Single submitter thyroid dyshormonogenesis 2A
  • p.Lys439= Single submitter thyroid dyshormonogenesis 2A
  • p.Lys621= Single submitter thyroid dyshormonogenesis 2A
  • p.Phe253= Single submitter thyroid dyshormonogenesis 2A
  • p.Pro280= Single submitter thyroid dyshormonogenesis 2A
  • p.Pro906Leu Single submitter thyroid dyshormonogenesis 2A ⚠
  • p.Ser747= Single submitter thyroid dyshormonogenesis 2A
  • p.Thr10= Single submitter thyroid dyshormonogenesis 2A
  • p.Thr605Ser Single submitter Inborn genetic diseases ⚠
  • p.Trp671Leu Single submitter ⚠
  • p.Val220= Single submitter thyroid dyshormonogenesis 2A
  • p.Val748Met Single submitter thyroid dyshormonogenesis 2A ⚠

Benign 46

Benign/Likely benign 20

  • c.2006+20G>A Multiple submitters
  • c.2519-17C>T Multiple submitters
  • c.94+20C>T Multiple submitters
  • p.Ala257Ser Multiple submitters thyroid dyshormonogenesis 2A
  • p.Ala373Ser Multiple submitters thyroid dyshormonogenesis 2A
  • p.Ala426Gly Multiple submitters thyroid dyshormonogenesis 2A
  • p.Asn557= Multiple submitters
  • p.Asp505= Multiple submitters
  • p.Asp666= Multiple submitters thyroid dyshormonogenesis 2A
  • p.Leu4= Multiple submitters thyroid dyshormonogenesis 2A
  • p.Leu529= Multiple submitters
  • p.Leu529Phe Multiple submitters thyroid dyshormonogenesis 2A
  • p.Met706Val Multiple submitters thyroid dyshormonogenesis 2A
  • p.Pro135His Multiple submitters thyroid dyshormonogenesis 2A
  • p.Pro715= Multiple submitters thyroid dyshormonogenesis 2A
  • p.Ser398Thr Multiple submitters thyroid dyshormonogenesis 2A
  • p.Thr344= Multiple submitters thyroid dyshormonogenesis 2A
  • p.Thr725Pro Multiple submitters thyroid dyshormonogenesis 2A
  • p.Val618Met Multiple submitters thyroid dyshormonogenesis 2A
  • p.Val847Ala Multiple submitters thyroid dyshormonogenesis 2A

Likely benign 416

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 168