TRAIP — 211 ClinVar variants
All ClinVar germline TRAIP variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 79 flagged for review →
10 Pathogenic · 3 Likely pathogenic · 1 Conflicting · 16 Benign · 4 Benign/Likely benign · 90 Likely benign · 87 Uncertain significance
Full TRAIP gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 79
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 1
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
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TRAIP p.Arg18Cys
Pathogenic
No assertion criteria
Seckel syndrome 9
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
TRAIP p.Glu300Lys
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 52
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
TRAIP p.Arg436His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TRAIP p.Asp431Gly
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TRAIP p.Glu209Lys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TRAIP p.Gly421Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TRAIP p.Leu340Phe
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TRAIP p.Lys61Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TRAIP p.Val73Gly
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TRAIP p.Arg158Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- TRAIP p.Arg290Cys Uncertain significance Single submitter
- TRAIP p.Arg290His Uncertain significance Single submitter
-
TRAIP p.Arg307Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Arg307Pro
Uncertain significance
Single submitter
Inborn genetic diseases
- TRAIP p.Arg311Cys Uncertain significance Single submitter
-
TRAIP p.Arg311His
Uncertain significance
Single submitter
Inborn genetic diseases
- TRAIP p.Arg423Gln Uncertain significance Single submitter
-
TRAIP p.Arg44Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Arg50Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Asn85Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- TRAIP p.Asp105Asn Uncertain significance Single submitter
-
TRAIP p.Asp109Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Asp261Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Asp323Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Cys408Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
- TRAIP p.Gln428His Uncertain significance Single submitter
- TRAIP p.Gln448His Uncertain significance Single submitter
-
TRAIP p.Glu154Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Glu179Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- TRAIP p.Glu376Gly Uncertain significance Single submitter
-
TRAIP p.Gly188Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Gly219Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Gly370Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Gly383Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.His27Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Ile104Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Lys227Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Lys443Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Lys95Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Met130Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Met166Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Met265Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Met273Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Phe230Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- TRAIP p.Pro298Ser Uncertain significance Single submitter
-
TRAIP p.Pro325Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- TRAIP p.Pro399Ser Uncertain significance Single submitter
-
TRAIP p.Thr287Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- TRAIP p.Thr465Asn Uncertain significance Single submitter
- TRAIP p.Trp468Leu Uncertain significance Single submitter
-
TRAIP p.Val194Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Val199Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Val322Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Val433Ile
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 25
The independent predictors disagree with each other — read with care.
- TRAIP p.Arg157His Benign/Likely benign Multiple submitters
-
TRAIP p.Arg436Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TRAIP p.Asp244His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TRAIP p.Gln36Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TRAIP p.Ile104Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TRAIP p.Pro439Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TRAIP p.Ser330Phe
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
TRAIP p.Arg157Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Arg158Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- TRAIP p.Arg177Cys Uncertain significance Single submitter
-
TRAIP p.Arg233Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Arg290Ser
Uncertain significance
Single submitter
Seckel syndrome 9
-
TRAIP p.Arg328Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- TRAIP p.Arg403Thr Uncertain significance Single submitter
- TRAIP p.Arg56Gly Uncertain significance Single submitter
- TRAIP p.Gln254Leu Uncertain significance Single submitter
-
TRAIP p.Gln32Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Glu129Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Glu242Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Leu62Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Pro296Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- TRAIP p.Ser232Phe Uncertain significance Single submitter
-
TRAIP p.Ser407Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Thr110Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
TRAIP p.Val455Met
Uncertain significance
Single submitter
Inborn genetic diseases
All TRAIP variants
Pathogenic 10
- p.Arg185Ter Single submitter Seckel syndrome 9
- p.Asn279fs Single submitter
- p.Gln101Ter Single submitter
- p.Glu220fs Single submitter
- p.Glu242Ter Single submitter
- p.Thr117fs Single submitter
- p.Thr28fs Single submitter
- p.Thr57fs Single submitter
- p.Val292_Leu293insTer Single submitter
- p.Arg18Cys No assertion criteria Seckel syndrome 9 ⚠
Likely pathogenic 3
- c.796-2A>G Single submitter
- c.98+2T>G Single submitter
- p.Gln365Ter Single submitter Seckel syndrome 9
Conflicting classifications of pathogenicity 1
- p.Glu300Lys Single submitter Inborn genetic diseases ⚠
Benign 16
- c.1288-9C>T Multiple submitters
- c.240+45G>A Multiple submitters Seckel syndrome 9
- c.408+100T>A Multiple submitters
- c.618-147C>T Multiple submitters
- c.705+154G>C Multiple submitters
- c.705+23T>C Multiple submitters
- c.706-272A>G Multiple submitters
- c.795+132C>A Multiple submitters
- c.885-130C>T Multiple submitters
- c.*144G>A Multiple submitters
- p.Thr454= Multiple submitters Seckel syndrome 9
- c.1037+191T>G Single submitter
- c.240+81CTCTT[4] Single submitter
- c.617+57G>A Single submitter
- c.618-85A>G Single submitter
- p.Arg423= Single submitter
Benign/Likely benign 4
- c.99-9T>G Multiple submitters Seckel syndrome 9
- p.Arg157His Multiple submitters ⚠
- p.Gln101= Multiple submitters Seckel syndrome 9
- p.Tyr208= Multiple submitters
Likely benign 90
- p.Cys201= Multiple submitters
- p.Gly335Val Multiple submitters
- p.Ile356Thr Multiple submitters Inborn genetic diseases
- p.Val288= Multiple submitters
- c.1037+11G>A Single submitter
- c.1037+14G>A Single submitter
- c.1037+9T>C Single submitter
- c.1038-7C>T Single submitter
- c.1086+17A>G Single submitter
- c.1086+8C>G Single submitter
- c.1236+10G>A Single submitter
- c.1236+14C>T Single submitter
- c.1237-20A>G Single submitter
- c.1287+10T>C Single submitter
- c.1288-14G>A Single submitter
- c.1288-4C>T Single submitter
- c.156+10T>C Single submitter
- c.156+8T>A Single submitter
- c.157-11C>T Single submitter
- c.157-15del Single submitter
- c.157-4C>A Single submitter
- c.240+17T>C Single submitter
- c.241-12A>G Single submitter
- c.241-14G>C Single submitter
- c.241-20T>A Single submitter
- c.280+17C>T Single submitter
- c.280+18G>A Single submitter
- c.281-11C>T Single submitter
- c.281-20G>A Single submitter
- c.409-6C>T Single submitter
- c.409-8C>A Single submitter
- c.503+12G>A Single submitter
- c.504-13G>A Single submitter
- c.504-18G>T Single submitter
- c.617+15C>A Single submitter
- c.618-10C>T Single submitter
- c.706-14A>G Single submitter
- c.706-8_706-5del Single submitter
- c.796-15C>T Single submitter
- c.796-9C>T Single submitter
- c.884+18C>T Single submitter
- c.885-12C>G Single submitter
- c.885-17G>C Single submitter
- c.98+9C>T Single submitter
- c.99-14G>C Single submitter
- p.Ala193= Single submitter
- p.Ala253= Single submitter
- p.Arg108Gln Single submitter
- p.Arg158= Single submitter
- p.Arg18= Single submitter
- p.Arg328Gln Single submitter Inborn genetic diseases
- p.Arg414= Single submitter
- p.Asn115= Single submitter
- p.Asp289Asn Single submitter Inborn genetic diseases
- p.Asp315= Single submitter
- p.Asp94Glu Single submitter Inborn genetic diseases
- p.Cys46= Single submitter
- p.Gln101Glu Single submitter
- p.Gln448= Single submitter
- p.Glu338Lys Single submitter Inborn genetic diseases
- p.Gly416= Single submitter
- p.His24= Single submitter
- p.His27= Single submitter
- p.Ile387Val Single submitter Inborn genetic diseases
- p.Leu171= Single submitter
- p.Leu229= Single submitter
- p.Leu243= Single submitter
- p.Leu248= Single submitter
- p.Leu420= Single submitter
- p.Leu90= Single submitter
- p.Lys344= Single submitter
- p.Lys445= Single submitter
- p.Pro282= Single submitter
- p.Pro308= Single submitter
- p.Pro348= Single submitter
- p.Pro377= Single submitter
- p.Pro386= Single submitter
- p.Pro402= Single submitter
- p.Pro439= Single submitter
- p.Ser17= Single submitter
- p.Ser309= Single submitter
- p.Ser332= Single submitter
- p.Ser364= Single submitter
- p.Ser469= Single submitter
- p.Thr110= Single submitter
- p.Thr134= Single submitter
- p.Thr272= Single submitter
- p.Tyr337= Single submitter
- p.Val221= Single submitter
- p.Val352= Single submitter
Uncertain significance 87
- p.Arg436Cys Multiple submitters Inborn genetic diseases ⚠
- p.Arg436His Multiple submitters Inborn genetic diseases ⚠
- p.Asp244His Multiple submitters Inborn genetic diseases ⚠
- p.Asp431Gly Multiple submitters Inborn genetic diseases ⚠
- p.Gln36Arg Multiple submitters Inborn genetic diseases ⚠
- p.Glu209Lys Multiple submitters Inborn genetic diseases ⚠
- p.Gly421Ser Multiple submitters Inborn genetic diseases ⚠
- p.Ile104Met Multiple submitters Inborn genetic diseases ⚠
- p.Leu340Phe Multiple submitters Inborn genetic diseases ⚠
- p.Lys61Arg Multiple submitters Inborn genetic diseases ⚠
- p.Pro439Arg Multiple submitters Inborn genetic diseases ⚠
- p.Ser330Phe Multiple submitters Inborn genetic diseases ⚠
- p.Val73Gly Multiple submitters Inborn genetic diseases ⚠
- c.409-5T>G Single submitter
- c.504-15G>A Single submitter Seckel syndrome 9
- c.617+4C>T Single submitter
- c.618-3C>A Single submitter
- c.706-3T>C Single submitter
- c.99-15T>G Single submitter
- p.Arg157Gly Single submitter Inborn genetic diseases ⚠
- p.Arg158Gln Single submitter Inborn genetic diseases ⚠
- p.Arg158Trp Single submitter Inborn genetic diseases ⚠
- p.Arg177Cys Single submitter ⚠
- p.Arg226delinsSerTer Single submitter Seckel syndrome 9
- p.Arg233Gly Single submitter Inborn genetic diseases ⚠
- p.Arg290Cys Single submitter ⚠
- p.Arg290His Single submitter ⚠
- p.Arg290Ser Single submitter Seckel syndrome 9 ⚠
- p.Arg307Gln Single submitter Inborn genetic diseases ⚠
- p.Arg307Leu Single submitter
- p.Arg307Pro Single submitter Inborn genetic diseases ⚠
- p.Arg311Cys Single submitter ⚠
- p.Arg311His Single submitter Inborn genetic diseases ⚠
- p.Arg328Trp Single submitter Inborn genetic diseases ⚠
- p.Arg403Thr Single submitter ⚠
- p.Arg423Gln Single submitter ⚠
- p.Arg44Trp Single submitter Inborn genetic diseases ⚠
- p.Arg50Gln Single submitter Inborn genetic diseases ⚠
- p.Arg56Gly Single submitter ⚠
- p.Asn85Ser Single submitter Inborn genetic diseases ⚠
- p.Asp105Asn Single submitter ⚠
- p.Asp109Glu Single submitter Inborn genetic diseases ⚠
- p.Asp261Ala Single submitter Inborn genetic diseases ⚠
- p.Asp323Gly Single submitter Inborn genetic diseases ⚠
- p.Cys408Tyr Single submitter Inborn genetic diseases ⚠
- p.Gln254Leu Single submitter ⚠
- p.Gln32Leu Single submitter Inborn genetic diseases ⚠
- p.Gln428His Single submitter ⚠
- p.Gln448His Single submitter ⚠
- p.Glu129Lys Single submitter Inborn genetic diseases ⚠
- p.Glu154Asp Single submitter Inborn genetic diseases ⚠
- p.Glu179Lys Single submitter Inborn genetic diseases ⚠
- p.Glu242Ala Single submitter Inborn genetic diseases ⚠
- p.Glu376Gly Single submitter ⚠
- p.Gly188Val Single submitter Inborn genetic diseases ⚠
- p.Gly219Ala Single submitter Inborn genetic diseases ⚠
- p.Gly370Ser Single submitter Inborn genetic diseases ⚠
- p.Gly383Asp Single submitter Inborn genetic diseases ⚠
- p.His27Tyr Single submitter Inborn genetic diseases ⚠
- p.Ile104Val Single submitter Inborn genetic diseases ⚠
- p.Leu62Phe Single submitter Inborn genetic diseases ⚠
- p.Lys227Arg Single submitter Inborn genetic diseases ⚠
- p.Lys443Thr Single submitter Inborn genetic diseases ⚠
- p.Lys93= Single submitter
- p.Lys95Glu Single submitter Inborn genetic diseases ⚠
- p.Met130Leu Single submitter Inborn genetic diseases ⚠
- p.Met166Val Single submitter Inborn genetic diseases ⚠
- p.Met265Val Single submitter Inborn genetic diseases ⚠
- p.Met273Thr Single submitter Inborn genetic diseases ⚠
- p.Phe230Leu Single submitter Inborn genetic diseases ⚠
- p.Pro296Gln Single submitter Inborn genetic diseases ⚠
- p.Pro298Ser Single submitter ⚠
- p.Pro325Leu Single submitter Inborn genetic diseases ⚠
- p.Pro399Ser Single submitter ⚠
- p.Ser232Phe Single submitter ⚠
- p.Ser407Phe Single submitter Inborn genetic diseases ⚠
- p.Thr110Met Single submitter Inborn genetic diseases ⚠
- p.Thr287Ala Single submitter Inborn genetic diseases ⚠
- p.Thr465Asn Single submitter ⚠
- p.Trp468Leu Single submitter ⚠
- p.Val194Met Single submitter Inborn genetic diseases ⚠
- p.Val199Ala Single submitter Inborn genetic diseases ⚠
- p.Val322Met Single submitter Inborn genetic diseases ⚠
- p.Val433Ile Single submitter Inborn genetic diseases ⚠
- p.Val455Met Single submitter Inborn genetic diseases ⚠
- p.Glu379Ter No assertion criteria
- p.Glu77Ter No assertion criteria