TRMT5 — 253 ClinVar variants

All ClinVar germline TRMT5 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 122 flagged for review →

1 Pathogenic · 2 Likely pathogenic · 8 Conflicting · 9 Benign · 7 Benign/Likely benign · 83 Likely benign · 143 Uncertain significance

Full TRMT5 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 122

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 6

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 93

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 23

The independent predictors disagree with each other — read with care.

All TRMT5 variants

Pathogenic 1

  • p.Met386Val No assertion criteria combined oxidative phosphorylation defect type 26

Likely pathogenic 2

  • p.Ala89_Phe90insTer Single submitter combined oxidative phosphorylation defect type 26
  • p.Arg87Ter Single submitter combined oxidative phosphorylation defect type 26

Conflicting classifications of pathogenicity 8

  • p.Glu294Ala Single submitter combined oxidative phosphorylation defect type 26 ⚠
  • p.Ile105fs Single submitter combined oxidative phosphorylation defect type 26
  • p.Ile222Thr Single submitter combined oxidative phosphorylation defect type 26 ⚠
  • p.Ile24Val Single submitter combined oxidative phosphorylation defect type 26 ⚠
  • p.Met139Leu Single submitter Inborn genetic diseases ⚠
  • p.Pro487Ser Single submitter Inborn genetic diseases ⚠
  • p.Ser107fs Single submitter combined oxidative phosphorylation defect type 26
  • p.Thr494Met Single submitter intellectual disability ⚠

Benign 9

Benign/Likely benign 7

Likely benign 83

Uncertain significance 143