TRPV3 — 500 ClinVar variants

All ClinVar germline TRPV3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 178 flagged for review →

8 Pathogenic · 2 Pathogenic/Likely pathogenic · 2 Likely pathogenic · 19 Conflicting · 142 Benign · 19 Benign/Likely benign · 71 Likely benign · 237 Uncertain significance

Full TRPV3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 178

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 10

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 122

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 46

The independent predictors disagree with each other — read with care.

All TRPV3 variants

Pathogenic 8

Pathogenic/Likely pathogenic 2

  • p.Gly568Asp Multiple submitters TRPV3-related disorder
  • p.Leu673Phe Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma

Likely pathogenic 2

Conflicting classifications of pathogenicity 19

  • c.1401+4C>T Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.1401+9G>T Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Ala354Val Single submitter ⚠
  • p.Arg292Trp Single submitter Inborn genetic diseases ⚠
  • p.Arg319Cys Single submitter Inborn genetic diseases ⚠
  • p.Arg319Leu Single submitter Inborn genetic diseases ⚠
  • p.Arg371Gln Single submitter Inborn genetic diseases ⚠
  • p.Arg693His Single submitter isolated focal non-epidermolytic palmoplantar keratoderma ⚠
  • p.Arg729Ter Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Asn180Lys Single submitter isolated focal non-epidermolytic palmoplantar keratoderma ⚠
  • p.Gln645His Single submitter Inborn genetic diseases
  • p.Glu725Lys Single submitter Inborn genetic diseases ⚠
  • p.Leu541Ser Single submitter isolated focal non-epidermolytic palmoplantar keratoderma ⚠
  • p.Leu553= Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Leu657= Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Met431Ile Single submitter Inborn genetic diseases ⚠
  • p.Val127Ala Single submitter isolated focal non-epidermolytic palmoplantar keratoderma ⚠
  • p.Val552Met Single submitter isolated focal non-epidermolytic palmoplantar keratoderma ⚠
  • p.Val577Phe Single submitter ⚠

Benign 142

  • c.1065+16G>T Multiple submitters Olmsted syndrome 1
  • c.1065+79T>C Multiple submitters
  • c.1066-46T>C Multiple submitters Olmsted syndrome 1
  • c.1066-52T>G Multiple submitters
  • c.1066-98G>A Multiple submitters
  • c.119+148A>G Multiple submitters
  • c.119+272G>C Multiple submitters
  • c.1402-112C>T Multiple submitters
  • c.1503+13C>G Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.1503+154G>T Multiple submitters
  • c.1503+15C>T Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.1503+336C>T Multiple submitters
  • c.1504-15C>T Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.1504-50T>C Multiple submitters
  • c.1743+50T>C Multiple submitters
  • c.1744-174A>G Multiple submitters
  • c.1810+84T>C Multiple submitters
  • c.1811-209T>C Multiple submitters
  • c.1811-222G>T Multiple submitters
  • c.2198+61T>C Multiple submitters
  • c.2198+62G>A Multiple submitters
  • c.2199-61C>T Multiple submitters
  • c.224+27T>C Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.2278+10C>T Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.2278+183C>T Multiple submitters
  • c.2278+234T>C Multiple submitters
  • c.-142G>C Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.-190G>A Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.-269A>G Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*1039T>C Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*1229G>C Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*1533A>C Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*1565T>C Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*1590T>C Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*1790G>C Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*1841C>A Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2054A>T Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2093C>T Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2115G>A Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2272T>C Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2352G>A Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2437A>G Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2729A>G Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*3051A>G Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*3076A>C Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*3154C>T Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*656G>T Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*88G>A Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*902T>G Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*940G>A Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*949T>A Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Ala24= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Ala269= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Ala32Gly Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Ala628Thr Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Arg117Gly Multiple submitters Olmsted syndrome 1
  • p.Asn777= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Asp198Asn Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Asp641= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Gln90= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Gly678= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Ile186= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Leu420= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Leu473Phe Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Met479Leu Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Ser626= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Thr163= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Thr312= Multiple submitters Olmsted syndrome 1
  • p.Val132Ala Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Val132Met Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.1065+260G>A Single submitter
  • c.1066-175G>T Single submitter
  • c.1066-184_1066-174dup Single submitter
  • c.1066-259T>C Single submitter
  • c.1066-4C>G Single submitter
  • c.119+65dup Single submitter
  • c.120-157C>T Single submitter
  • c.1243-313A>G Single submitter
  • c.1401+162A>G Single submitter
  • c.1402-266C>T Single submitter
  • c.1504-166C>T Single submitter
  • c.1504-274G>A Single submitter
  • c.1743+19C>T Single submitter
  • c.2198+256C>T Single submitter
  • c.2198+270del Single submitter
  • c.2198+339C>T Single submitter
  • c.2199-156_2199-154del Single submitter
  • c.2199-238T>C Single submitter
  • c.2199-34_2199-33insA Single submitter
  • c.224+130T>A Single submitter
  • c.224+189G>A Single submitter
  • c.224+200A>G Single submitter
  • c.2278+8C>T Single submitter
  • c.312-208G>A Single submitter
  • c.643+275T>C Single submitter
  • c.643+2T>C Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.644-242G>T Single submitter
  • c.644-253A>C Single submitter
  • c.-2-8T>C Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.-226G>C Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.-234C>T Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*1083A>C Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*1424G>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*1485G>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*186G>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*1950C>T Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2014A>T Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2068A>G Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2072A>C Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2087T>G Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2094G>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2153A>G Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2169C>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2477T>G Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2485G>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2604G>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2610C>T Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2611G>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2760A>C Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*2783G>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*279G>C Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*3149T>C Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*3155G>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*3196T>C Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*3255G>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*3258G>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*3307G>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*576A>T Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*58C>T Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*63C>G Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • c.*64TG[1] Single submitter
  • c.*84G>A Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Arg319His Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Asp414= Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • p.His745= Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Ile360Leu Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Leu551= Single submitter
  • p.Pro275= Single submitter
  • p.Pro344= Single submitter
  • p.Ser607= Single submitter
  • p.Thr476Met Single submitter isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Val577Ile Single submitter

Benign/Likely benign 19

  • c.119+10G>A Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.1743+16C>T Multiple submitters
  • c.1743+20G>A Multiple submitters
  • c.224+8C>T Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.2278+9G>A Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.2279-15T>A Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • c.784+11C>T Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Ala348= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Ala349Thr Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Arg369Trp Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Asn412= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.His284= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Leu139= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Leu361= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Lys350= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Met320Val Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Pro786= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Thr566= Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma
  • p.Thr774Ile Multiple submitters isolated focal non-epidermolytic palmoplantar keratoderma

Likely benign 71

Uncertain significance 237