UBA2 — 112 ClinVar variants
All ClinVar germline UBA2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 69 flagged for review →
13 Pathogenic · 1 Pathogenic/Likely pathogenic · 13 Likely pathogenic · 2 Conflicting · 1 Benign · 7 Likely benign · 75 Uncertain significance
Full UBA2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 69
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
UBA2 p.Arg612Trp
Conflicting
Single submitter
ACCES syndrome
-
UBA2 p.Leu307Pro
Conflicting
Single submitter
ACCES syndrome
Predictors lean, ClinVar uncertain 53
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
UBA2 p.Ile468Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
UBA2 p.Ala121Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Ala215Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Ala296Val
Uncertain significance
Single submitter
Inborn genetic diseases
- UBA2 p.Ala445Thr Uncertain significance Single submitter
-
UBA2 p.Ala559Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Ala622Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Ala87Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Arg122Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Arg122Gly
Uncertain significance
Single submitter
split hand-foot malformation
-
UBA2 p.Arg264Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Arg330Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Arg59Gly
Uncertain significance
Single submitter
ACCES syndrome
-
UBA2 p.Arg610His
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Asn513Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Asp298His
Uncertain significance
Single submitter
Inborn genetic diseases
- UBA2 p.Asp338Gly Uncertain significance Single submitter
-
UBA2 p.Cys158Arg
Uncertain significance
Single submitter
ACCES syndrome
-
UBA2 p.Gln167Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Gln412Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Glu218Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Glu292Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Glu594Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- UBA2 p.Gly396Arg Uncertain significance Single submitter
- UBA2 p.Gly40Asp Uncertain significance Single submitter
-
UBA2 p.His332Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- UBA2 p.His457Arg Uncertain significance Single submitter
-
UBA2 p.Ile263Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Ile387Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Ile47Met
Uncertain significance
Single submitter
Inborn genetic diseases
- UBA2 p.Leu429Pro Uncertain significance Single submitter
- UBA2 p.Lys377Asn Uncertain significance Single submitter
-
UBA2 p.Lys467Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Lys504Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Lys564Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- UBA2 p.Lys77Thr Uncertain significance Single submitter
- UBA2 p.Met269Val Uncertain significance Single submitter
-
UBA2 p.Phe170Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- UBA2 p.Pro171Leu Uncertain significance Single submitter
- UBA2 p.Pro281Ser Uncertain significance Single submitter
- UBA2 p.Ser239Thr Uncertain significance Single submitter
- UBA2 p.Ser297Leu Uncertain significance Single submitter
-
UBA2 p.Ser592Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Thr294Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Thr294Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Thr294Pro
Uncertain significance
Single submitter
Inborn genetic diseases
- UBA2 p.Thr328Ile Uncertain significance Single submitter
-
UBA2 p.Thr460Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- UBA2 p.Val155Glu Uncertain significance Single submitter
-
UBA2 p.Val287Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Val315Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Val459Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Val90Leu
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 14
The independent predictors disagree with each other — read with care.
-
UBA2 p.Arg274Trp
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
UBA2 p.Arg320Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Arg453Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Arg453Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- UBA2 p.Asp314Gly Uncertain significance Single submitter
-
UBA2 p.Asp572His
Uncertain significance
Single submitter
Inborn genetic diseases
- UBA2 p.Glu78Lys Uncertain significance Single submitter
-
UBA2 p.Gly337Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Gly514Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- UBA2 p.Leu192Val Uncertain significance Single submitter
-
UBA2 p.Met352Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Ser577Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBA2 p.Thr578Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- UBA2 p.Val206Leu Uncertain significance Single submitter
All UBA2 variants
Pathogenic 13
- p.Arg122Ter Multiple submitters UBA2-related disorder
- c.460-2A>G Single submitter ACCES syndrome
- c.649+1G>A Single submitter ACCES syndrome
- c.650-1G>C Single submitter
- p.Leu267Ter Single submitter chromosome 19q13.11 deletion syndrome, distal
- p.Leu418fs Single submitter ACCES syndrome
- p.Met113fs Single submitter ACCES syndrome
- p.Thr460fs Single submitter
- p.Trp273fs Single submitter Inborn genetic diseases
- p.Arg373fs No assertion criteria ACCES syndrome
- p.Glu205fs No assertion criteria ACCES syndrome
- p.Phe109fs No assertion criteria ACCES syndrome
- p.Tyr442fs No assertion criteria ACCES syndrome
Pathogenic/Likely pathogenic 1
- p.Met1Val Multiple submitters Inborn genetic diseases
Likely pathogenic 13
- p.Arg107Ter Multiple submitters ACCES syndrome
- c.1038+1G>A Single submitter ACCES syndrome
- c.582-1G>C Single submitter ACCES syndrome
- p.Ala392fs Single submitter UBA2-related disorder
- p.Arg119fs Single submitter
- p.Arg227Ter Single submitter UBA2-related disorder
- p.Asn56Thr Single submitter
- p.Asp50Gly Single submitter ACCES syndrome
- p.Gln147Ter Single submitter ACCES syndrome
- p.Gln465Ter Single submitter ACCES syndrome
- p.Glu483Lys Single submitter ACCES syndrome
- p.Lys257Ter Single submitter ACCES syndrome
- p.Met269fs No assertion criteria UBA2-related disorder
Conflicting classifications of pathogenicity 2
- p.Arg612Trp Single submitter ACCES syndrome ⚠
- p.Leu307Pro Single submitter ACCES syndrome ⚠
Benign 1
- c.872-14A>T Multiple submitters
Likely benign 7
- c.1132+17A>C Single submitter
- c.1133-7_1133-6dup Single submitter
- p.Asn194= Single submitter Inborn genetic diseases
- p.Asn98= Single submitter Inborn genetic diseases
- p.Gly514= Single submitter
- p.Lys86= Single submitter
- p.Val90Ile Single submitter Inborn genetic diseases
Uncertain significance 75
- p.Arg274Trp Multiple submitters Inborn genetic diseases ⚠
- p.Ile468Leu Multiple submitters Inborn genetic diseases ⚠
- c.1039-5G>A Single submitter
- c.1401+5G>A Single submitter
- c.223-1G>A Single submitter
- p.Ala121Thr Single submitter Inborn genetic diseases ⚠
- p.Ala215Val Single submitter Inborn genetic diseases ⚠
- p.Ala296Val Single submitter Inborn genetic diseases ⚠
- p.Ala445Thr Single submitter ⚠
- p.Ala559Thr Single submitter Inborn genetic diseases ⚠
- p.Ala622Gly Single submitter Inborn genetic diseases ⚠
- p.Ala87Pro Single submitter Inborn genetic diseases ⚠
- p.Arg122Gln Single submitter Inborn genetic diseases ⚠
- p.Arg122Gly Single submitter split hand-foot malformation ⚠
- p.Arg264Ser Single submitter Inborn genetic diseases ⚠
- p.Arg320Cys Single submitter Inborn genetic diseases ⚠
- p.Arg330Lys Single submitter Inborn genetic diseases ⚠
- p.Arg453Gln Single submitter Inborn genetic diseases ⚠
- p.Arg453Trp Single submitter Inborn genetic diseases ⚠
- p.Arg59Gly Single submitter ACCES syndrome ⚠
- p.Arg610His Single submitter Inborn genetic diseases ⚠
- p.Asn513Asp Single submitter Inborn genetic diseases ⚠
- p.Asp298His Single submitter Inborn genetic diseases ⚠
- p.Asp314Gly Single submitter ⚠
- p.Asp338Gly Single submitter ⚠
- p.Asp572His Single submitter Inborn genetic diseases ⚠
- p.Cys158Arg Single submitter ACCES syndrome ⚠
- p.Gln167Arg Single submitter Inborn genetic diseases ⚠
- p.Gln412Glu Single submitter Inborn genetic diseases ⚠
- p.Glu218Lys Single submitter Inborn genetic diseases ⚠
- p.Glu292Asp Single submitter Inborn genetic diseases ⚠
- p.Glu594Lys Single submitter Inborn genetic diseases ⚠
- p.Glu78Lys Single submitter ⚠
- p.Gly233Ser Single submitter
- p.Gly248Val Single submitter Inborn genetic diseases
- p.Gly337Glu Single submitter Inborn genetic diseases ⚠
- p.Gly396Arg Single submitter ⚠
- p.Gly40Asp Single submitter ⚠
- p.Gly514Asp Single submitter Inborn genetic diseases ⚠
- p.Gly514Glu Single submitter
- p.His332Arg Single submitter Inborn genetic diseases ⚠
- p.His457Arg Single submitter ⚠
- p.Ile263Val Single submitter Inborn genetic diseases ⚠
- p.Ile387Val Single submitter Inborn genetic diseases ⚠
- p.Ile47Met Single submitter Inborn genetic diseases ⚠
- p.Leu192Val Single submitter ⚠
- p.Leu429Pro Single submitter ⚠
- p.Lys377Asn Single submitter ⚠
- p.Lys467Asn Single submitter Inborn genetic diseases ⚠
- p.Lys504Arg Single submitter Inborn genetic diseases ⚠
- p.Lys564Glu Single submitter Inborn genetic diseases ⚠
- p.Lys77Thr Single submitter ⚠
- p.Met269Val Single submitter ⚠
- p.Met352Val Single submitter Inborn genetic diseases ⚠
- p.Phe170Leu Single submitter Inborn genetic diseases ⚠
- p.Pro171Leu Single submitter ⚠
- p.Pro281Ser Single submitter ⚠
- p.Ser239Thr Single submitter ⚠
- p.Ser297Leu Single submitter ⚠
- p.Ser577Cys Single submitter Inborn genetic diseases ⚠
- p.Ser592Leu Single submitter Inborn genetic diseases ⚠
- p.Ser79Gly Single submitter ACCES syndrome
- p.Thr294Ala Single submitter Inborn genetic diseases ⚠
- p.Thr294Met Single submitter Inborn genetic diseases ⚠
- p.Thr294Pro Single submitter Inborn genetic diseases ⚠
- p.Thr328Ile Single submitter ⚠
- p.Thr460Ser Single submitter Inborn genetic diseases ⚠
- p.Thr578Ile Single submitter Inborn genetic diseases ⚠
- p.Val155Glu Single submitter ⚠
- p.Val206Leu Single submitter ⚠
- p.Val287Leu Single submitter Inborn genetic diseases ⚠
- p.Val315Leu Single submitter Inborn genetic diseases ⚠
- p.Val459Met Single submitter Inborn genetic diseases ⚠
- p.Val90Leu Single submitter Inborn genetic diseases ⚠
- p.Asn88fs No assertion criteria UBA2-related disorder