UBQLN2 — 242 ClinVar variants

All ClinVar germline UBQLN2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 126 flagged for review →

3 Pathogenic · 4 Likely pathogenic · 17 Conflicting · 8 Benign · 4 Benign/Likely benign · 50 Likely benign · 156 Uncertain significance

Full UBQLN2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 126

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 3

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 8

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 91

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 24

The independent predictors disagree with each other — read with care.

All UBQLN2 variants

Pathogenic 3

  • p.Pro497His Multiple submitters amyotrophic lateral sclerosis type 15
  • p.Pro497Ser Single submitter amyotrophic lateral sclerosis type 15 ⚠
  • p.Pro506Thr Single submitter amyotrophic lateral sclerosis type 15

Likely pathogenic 4

Conflicting classifications of pathogenicity 17

  • p.499GPI[1] Single submitter amyotrophic lateral sclerosis type 15
  • p.Ala47= Single submitter amyotrophic lateral sclerosis type 15
  • p.Ala542Ser Single submitter amyotrophic lateral sclerosis type 15 ⚠
  • p.Ala572Val Single submitter amyotrophic lateral sclerosis type 15 ⚠
  • p.Asn348Ser Single submitter amyotrophic lateral sclerosis type 15 ⚠
  • p.Gln109His Single submitter amyotrophic lateral sclerosis type 15 ⚠
  • p.Gly120Ala Single submitter amyotrophic lateral sclerosis type 15 ⚠
  • p.Gly532= Single submitter amyotrophic lateral sclerosis type 15
  • p.Leu81= Single submitter amyotrophic lateral sclerosis type 15
  • p.Pro440Ser Single submitter amyotrophic lateral sclerosis type 15 ⚠
  • p.Pro474Ala Single submitter
  • p.Pro506Ser Single submitter amyotrophic lateral sclerosis type 15
  • p.Pro525Ser Single submitter amyotrophic lateral sclerosis ⚠
  • p.Ser340Ile Single submitter UBQLN2-related disorder ⚠
  • p.Thr487= Single submitter amyotrophic lateral sclerosis type 15
  • p.Thr508= Single submitter
  • p.Thr547Met Single submitter amyotrophic lateral sclerosis type 15 ⚠

Benign 8

  • p.Ser193= Multiple submitters amyotrophic lateral sclerosis type 15
  • p.Ala488= Single submitter amyotrophic lateral sclerosis type 15
  • p.Arg239= Single submitter amyotrophic lateral sclerosis type 15
  • p.Gln584His Single submitter amyotrophic lateral sclerosis type 15
  • p.Pro17= Single submitter amyotrophic lateral sclerosis type 15
  • p.Pro278= Single submitter amyotrophic lateral sclerosis type 15
  • p.Pro578= Single submitter amyotrophic lateral sclerosis type 15
  • p.Tyr391= Single submitter amyotrophic lateral sclerosis type 15

Benign/Likely benign 4

  • c.-163G>T Multiple submitters amyotrophic lateral sclerosis type 15
  • p.Gly461= Multiple submitters amyotrophic lateral sclerosis type 15
  • p.Leu434= Multiple submitters amyotrophic lateral sclerosis type 15
  • p.Pro135= Multiple submitters amyotrophic lateral sclerosis type 15

Likely benign 50

  • c.*1258C>T Multiple submitters amyotrophic lateral sclerosis type 15
  • p.Ala523= Multiple submitters amyotrophic lateral sclerosis type 15
  • p.Glu50= Multiple submitters amyotrophic lateral sclerosis type 15
  • p.Phe65= Multiple submitters amyotrophic lateral sclerosis type 15
  • p.Ala126= Single submitter
  • p.Ala356= Single submitter amyotrophic lateral sclerosis type 15
  • p.Ala469= Single submitter amyotrophic lateral sclerosis type 15
  • p.Ala566= Single submitter amyotrophic lateral sclerosis type 15
  • p.Ala606= Single submitter
  • p.Asn227= Single submitter
  • p.Asn590= Single submitter amyotrophic lateral sclerosis type 15
  • p.Gln55= Single submitter amyotrophic lateral sclerosis type 15
  • p.Gln584= Single submitter
  • p.Gly343= Single submitter
  • p.Gly351= Single submitter amyotrophic lateral sclerosis type 15
  • p.Gly479= Single submitter
  • p.Gly569= Single submitter amyotrophic lateral sclerosis type 15
  • p.Gly593= Single submitter amyotrophic lateral sclerosis type 15
  • p.Ile88= Single submitter
  • p.Leu148= Single submitter
  • p.Leu154= Single submitter amyotrophic lateral sclerosis type 15
  • p.Leu253= Single submitter amyotrophic lateral sclerosis type 15
  • p.Leu443= Single submitter amyotrophic lateral sclerosis type 15
  • p.Leu472= Single submitter amyotrophic lateral sclerosis type 15
  • p.Leu485= Single submitter amyotrophic lateral sclerosis type 15
  • p.Leu586= Single submitter amyotrophic lateral sclerosis type 15
  • p.Leu618= Single submitter amyotrophic lateral sclerosis type 15
  • p.Phe46= Single submitter amyotrophic lateral sclerosis type 15
  • p.Pro11= Single submitter amyotrophic lateral sclerosis type 15
  • p.Pro13= Single submitter amyotrophic lateral sclerosis type 15
  • p.Pro323= Single submitter amyotrophic lateral sclerosis type 15
  • p.Pro380= Single submitter amyotrophic lateral sclerosis type 15
  • p.Pro474= Single submitter amyotrophic lateral sclerosis type 15
  • p.Pro573= Single submitter amyotrophic lateral sclerosis type 15
  • p.Ser133= Single submitter amyotrophic lateral sclerosis type 15
  • p.Ser299= Single submitter
  • p.Ser300= Single submitter amyotrophic lateral sclerosis type 15
  • p.Ser337= Single submitter amyotrophic lateral sclerosis type 15
  • p.Ser388= Single submitter
  • p.Ser53= Single submitter amyotrophic lateral sclerosis type 15
  • p.Ser62= Single submitter amyotrophic lateral sclerosis type 15
  • p.Ser624= Single submitter amyotrophic lateral sclerosis type 15
  • p.Thr305= Single submitter amyotrophic lateral sclerosis type 15
  • p.Thr334Met Single submitter amyotrophic lateral sclerosis type 15 ⚠
  • p.Thr528= Single submitter amyotrophic lateral sclerosis type 15
  • p.Thr534= Single submitter amyotrophic lateral sclerosis type 15
  • p.Val48= Single submitter
  • p.Pro576= No assertion criteria UBQLN2-related disorder
  • p.Ser116= No assertion criteria UBQLN2-related disorder
  • p.Val37= No assertion criteria UBQLN2-related disorder

Uncertain significance 156