UBTF — 238 ClinVar variants
All ClinVar germline UBTF variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 96 flagged for review →
1 Pathogenic/Likely pathogenic · 6 Likely pathogenic · 2 Conflicting · 19 Benign · 2 Benign/Likely benign · 79 Likely benign · 129 Uncertain significance
Full UBTF gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 96
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 1
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
-
UBTF p.Glu476Lys
Likely pathogenic
Single submitter
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
UBTF p.Ser546Thr
Conflicting
Single submitter
Inborn genetic diseases
- UBTF p.Ser675Leu Conflicting Single submitter
Predictors lean, ClinVar uncertain 65
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
UBTF p.Ala391Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
- UBTF p.Gln166Arg Uncertain significance Multiple submitters
-
UBTF p.Leu437Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
UBTF p.Lys624Arg
Uncertain significance
Multiple submitters
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
-
UBTF p.Ala15Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Ala462Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Ala550Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Ala5Gly Uncertain significance Single submitter
-
UBTF p.Ala643Val
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Arg218Gln Uncertain significance Single submitter
-
UBTF p.Arg21His
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Arg253Gln Uncertain significance Single submitter
-
UBTF p.Arg423Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Arg642His Uncertain significance Single submitter
-
UBTF p.Arg660Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Arg668Gln Uncertain significance Single submitter
- UBTF p.Asn41Ser Uncertain significance Single submitter
-
UBTF p.Asn764Thr
Uncertain significance
Single submitter
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- UBTF p.Asp10Glu Uncertain significance Single submitter
-
UBTF p.Asp680Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Asp734Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Asp738Asn Uncertain significance Single submitter
-
UBTF p.Asp738Gly
Uncertain significance
Single submitter
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- UBTF p.Asp91His Uncertain significance Single submitter
- UBTF p.Gln386Glu Uncertain significance Single submitter
-
UBTF p.Gln672Arg
Uncertain significance
Single submitter
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- UBTF p.Glu257Lys Uncertain significance Single submitter
- UBTF p.Glu436Lys Uncertain significance Single submitter
-
UBTF p.Glu468Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Glu50Lys Uncertain significance Single submitter
-
UBTF p.Glu692Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Glu715Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Glu725Val Uncertain significance Single submitter
- UBTF p.Glu746Asp Uncertain significance Single submitter
-
UBTF p.Glu87Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Gly276Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Gly400Val
Uncertain significance
Single submitter
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
-
UBTF p.Gly479Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Gly700Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.His614Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Ile382Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Leu270Met
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Leu463Phe Uncertain significance Single submitter
-
UBTF p.Lys453Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Lys616Arg
Uncertain significance
Single submitter
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- UBTF p.Phe165Leu Uncertain significance Single submitter
- UBTF p.Pro112Leu Uncertain significance Single submitter
- UBTF p.Pro118Leu Uncertain significance Single submitter
-
UBTF p.Pro135Ser
Uncertain significance
Single submitter
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- UBTF p.Pro301Thr Uncertain significance Single submitter
- UBTF p.Pro395Ala Uncertain significance Single submitter
-
UBTF p.Pro395Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Pro570Leu Uncertain significance Single submitter
-
UBTF p.Ser389Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Ser650Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Ser709Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Ser709Pro Uncertain significance Single submitter
-
UBTF p.Ser709Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Thr223Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Thr388Ile
Uncertain significance
Single submitter
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- UBTF p.Trp206Cys Uncertain significance Single submitter
- UBTF p.Tyr456Phe Uncertain significance Single submitter
-
UBTF p.Tyr575Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Val217Met
Uncertain significance
Single submitter
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- UBTF p.Val356Met Uncertain significance Single submitter
Predictors split 28
The independent predictors disagree with each other — read with care.
-
UBTF p.Asn663Lys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
UBTF p.Glu210Lys
Pathogenic/Likely pathogenic
Multiple submitters
Rare syndromic intellectual disability
- UBTF p.Asn2Lys Uncertain significance Single submitter
- UBTF p.Asn506Lys Uncertain significance Single submitter
- UBTF p.Asn98Asp Uncertain significance Single submitter
-
UBTF p.Asp641His
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Gln576His Uncertain significance Single submitter
-
UBTF p.Glu168Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
UBTF p.Glu688Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Glu731Lys Uncertain significance Single submitter
-
UBTF p.Gly276Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Gly400Cys Uncertain significance Single submitter
-
UBTF p.Lys106Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Lys148Arg Uncertain significance Single submitter
-
UBTF p.Lys148Glu
Uncertain significance
Single submitter
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
-
UBTF p.Lys345Asn
Uncertain significance
Single submitter
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
-
UBTF p.Lys394Thr
Uncertain significance
Single submitter
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- UBTF p.Lys464Glu Uncertain significance Single submitter
- UBTF p.Lys577Asn Uncertain significance Single submitter
- UBTF p.Met27Ile Uncertain significance Single submitter
- UBTF p.Met529Ile Uncertain significance Single submitter
- UBTF p.Met53Ile Uncertain significance Single submitter
- UBTF p.Pro592Leu Uncertain significance Single submitter
- UBTF p.Ser321Gly Uncertain significance Single submitter
- UBTF p.Ser389Arg Uncertain significance Single submitter
-
UBTF p.Ser655Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- UBTF p.Thr117Ser Uncertain significance Single submitter
-
UBTF p.Gly661Cys
Uncertain significance
No assertion criteria
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
All UBTF variants
Pathogenic/Likely pathogenic 1
- p.Glu210Lys Multiple submitters Rare syndromic intellectual disability ⚠
Likely pathogenic 6
- c.1047+1G>A Single submitter
- p.Gln672Ter Single submitter
- p.Glu476Lys Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠
- p.Tyr308Ter Single submitter
- p.Val217fs Single submitter UBTF-related disorder
- p.Tyr626Ter No assertion criteria childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
Conflicting classifications of pathogenicity 2
- p.Ser546Thr Single submitter Inborn genetic diseases ⚠
- p.Ser675Leu Single submitter ⚠
Benign 19
- c.1359+32A>C Multiple submitters
- c.235-26C>G Multiple submitters
- c.318+29G>A Multiple submitters
- c.475-129G>A Multiple submitters
- c.59-126C>G Multiple submitters
- c.59-143C>T Multiple submitters
- c.905+27C>T Multiple submitters
- c.-67-161G>C Multiple submitters
- p.Leu362= Multiple submitters
- p.Lys533= Multiple submitters
- c.1626+13C>T Single submitter
- c.1905+168dup Single submitter
- c.1906-182del Single submitter
- c.1906-191_1906-182del Single submitter
- c.1906-192_1906-182del Single submitter
- c.660+172C>T Single submitter
- c.*141del Single submitter
- p.Leu501= Single submitter
- p.Lys612= No assertion criteria UBTF-related disorder
Benign/Likely benign 2
- p.Asp734del Multiple submitters Inborn genetic diseases
- p.Tyr354= Multiple submitters
Likely benign 79
- c.1953+10G>A Multiple submitters
- c.1953+3G>A Multiple submitters
- p.Asp687= Multiple submitters
- p.Glu731_Asp732insGlu Multiple submitters obesity disorder
- p.Gly707= Multiple submitters
- p.Ser745Thr Multiple submitters Inborn genetic diseases
- c.1047+15G>A Single submitter
- c.1090-16C>T Single submitter
- c.1090-6G>A Single submitter
- c.1359+6G>A Single submitter
- c.1515+6_1515+7del Single submitter
- c.1515+8G>T Single submitter
- c.1515+9G>A Single submitter
- c.1716-19C>T Single submitter
- c.1716-20_1716-18del Single submitter
- c.1905+19C>T Single submitter
- c.1906-8dup Single submitter
- c.1953+10_1953+14dup Single submitter
- c.1953+7del Single submitter
- c.2026-9C>T Single submitter
- c.2169+11C>T Single submitter
- c.2170-7C>T Single submitter
- c.318+10T>C Single submitter
- c.319-17C>T Single submitter
- c.540-14C>T Single submitter
- c.540-9C>G Single submitter
- c.660+10C>T Single submitter
- c.661-4G>A Single submitter Inborn genetic diseases
- c.771+16C>T Single submitter
- c.772-15C>A Single submitter
- c.772-21del Single submitter
- c.906-14C>T Single submitter
- c.906-19C>T Single submitter
- c.906-8T>C Single submitter
- c.*20G>C Single submitter
- p.Ala285= Single submitter
- p.Ala458Thr Single submitter
- p.Arg409= Single submitter
- p.Arg603= Single submitter
- p.Asn573= Single submitter
- p.Asp294= Single submitter
- p.Asp696= Single submitter
- p.Asp732Glu Single submitter Inborn genetic diseases
- p.Asp737= Single submitter
- p.Cys328= Single submitter
- p.Gln204= Single submitter
- p.Gln493= Single submitter
- p.Glu269= Single submitter
- p.Glu32= Single submitter
- p.Gly472Ser Single submitter Inborn genetic diseases
- p.Gly586= Single submitter
- p.His267= Single submitter
- p.His614= Single submitter
- p.His629= Single submitter
- p.Leu133= Single submitter
- p.Leu463= Single submitter
- p.Leu618= Single submitter
- p.Leu90= Single submitter
- p.Lys198= Single submitter
- p.Lys385= Single submitter
- p.Lys455= Single submitter
- p.Lys470= Single submitter
- p.Lys532= Single submitter
- p.Phe361= Single submitter
- p.Pro154= Single submitter
- p.Pro184= Single submitter
- p.Pro471= Single submitter
- p.Pro592= Single submitter
- p.Pro639= Single submitter
- p.Pro664= Single submitter
- p.Ser193= Single submitter
- p.Ser40= Single submitter
- p.Ser758= Single submitter
- p.Thr143= Single submitter
- p.Thr84= Single submitter
- p.Tyr541= Single submitter
- c.319-10C>T No assertion criteria UBTF-related disorder
- p.Ala502= No assertion criteria UBTF-related disorder
- p.Asp318= No assertion criteria UBTF-related disorder
Uncertain significance 129
- p.Ala391Thr Multiple submitters Inborn genetic diseases ⚠
- p.Asn663Lys Multiple submitters Inborn genetic diseases ⚠
- p.Asp62Gly Multiple submitters
- p.Gln166Arg Multiple submitters ⚠
- p.Leu437Val Multiple submitters Inborn genetic diseases ⚠
- p.Lys453del Multiple submitters
- p.Lys624Arg Multiple submitters childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠
- c.1516-1G>C Single submitter
- c.1716-11C>A Single submitter
- c.1953+1G>A Single submitter
- c.1954-12C>A Single submitter
- c.474+3G>T Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- c.474+5G>T Single submitter
- c.906-3T>A Single submitter
- c.-67-1G>C Single submitter
- p.Ala15Ser Single submitter Inborn genetic diseases ⚠
- p.Ala462Val Single submitter Inborn genetic diseases ⚠
- p.Ala550Ser Single submitter Inborn genetic diseases ⚠
- p.Ala5Gly Single submitter ⚠
- p.Ala643Val Single submitter Inborn genetic diseases ⚠
- p.Arg174Ter Single submitter
- p.Arg218Gln Single submitter ⚠
- p.Arg21His Single submitter Inborn genetic diseases ⚠
- p.Arg21Leu Single submitter
- p.Arg242fs Single submitter
- p.Arg253Gln Single submitter ⚠
- p.Arg296Ter Single submitter
- p.Arg423Gln Single submitter Inborn genetic diseases ⚠
- p.Arg459Ter Single submitter
- p.Arg642His Single submitter ⚠
- p.Arg660Gln Single submitter Inborn genetic diseases ⚠
- p.Arg668Gln Single submitter ⚠
- p.Arg668Trp Single submitter
- p.Asn2Lys Single submitter ⚠
- p.Asn41Ser Single submitter ⚠
- p.Asn506Lys Single submitter ⚠
- p.Asn764Thr Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠
- p.Asn98Asp Single submitter ⚠
- p.Asp10Glu Single submitter ⚠
- p.Asp262fs Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- p.Asp641His Single submitter Inborn genetic diseases ⚠
- p.Asp680Glu Single submitter Inborn genetic diseases ⚠
- p.Asp681del Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- p.Asp697del Single submitter
- p.Asp705Gly Single submitter
- p.Asp734_Glu735insAsp Single submitter
- p.Asp734Glu Single submitter Inborn genetic diseases ⚠
- p.Asp738Asn Single submitter ⚠
- p.Asp738Gly Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠
- p.Asp91His Single submitter ⚠
- p.Gln19His Single submitter Inborn genetic diseases
- p.Gln337Ter Single submitter Inborn genetic diseases
- p.Gln386Glu Single submitter ⚠
- p.Gln576His Single submitter ⚠
- p.Gln672Arg Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠
- p.Glu168Gln Single submitter Inborn genetic diseases ⚠
- p.Glu257Lys Single submitter ⚠
- p.Glu377del Single submitter
- p.Glu428del Single submitter
- p.Glu436Lys Single submitter ⚠
- p.Glu450_Lys451insGlu Single submitter
- p.Glu468Asp Single submitter Inborn genetic diseases ⚠
- p.Glu50Lys Single submitter ⚠
- p.Glu56Ter Single submitter
- p.Glu688Gln Single submitter Inborn genetic diseases ⚠
- p.Glu692Gly Single submitter Inborn genetic diseases ⚠
- p.Glu715Lys Single submitter Inborn genetic diseases ⚠
- p.Glu725Val Single submitter ⚠
- p.Glu731Lys Single submitter ⚠
- p.Glu746Asp Single submitter ⚠
- p.Glu746Lys Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- p.Glu87Val Single submitter Inborn genetic diseases ⚠
- p.Gly276Arg Single submitter Inborn genetic diseases ⚠
- p.Gly276Val Single submitter Inborn genetic diseases ⚠
- p.Gly400Cys Single submitter ⚠
- p.Gly400Val Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠
- p.Gly479Ser Single submitter Inborn genetic diseases ⚠
- p.Gly498= Single submitter
- p.Gly700Glu Single submitter Inborn genetic diseases ⚠
- p.His614Arg Single submitter Inborn genetic diseases ⚠
- p.Ile382Val Single submitter Inborn genetic diseases ⚠
- p.Leu270Met Single submitter Inborn genetic diseases ⚠
- p.Leu463Phe Single submitter ⚠
- p.Lys106Gln Single submitter Inborn genetic diseases ⚠
- p.Lys148Arg Single submitter ⚠
- p.Lys148Glu Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠
- p.Lys345Asn Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠
- p.Lys394Thr Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠
- p.Lys453Glu Single submitter Inborn genetic diseases ⚠
- p.Lys464Glu Single submitter ⚠
- p.Lys577Asn Single submitter ⚠
- p.Lys616Arg Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠
- p.Met27Ile Single submitter ⚠
- p.Met529Ile Single submitter ⚠
- p.Met53Ile Single submitter ⚠
- p.Phe122fs Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- p.Phe165Leu Single submitter ⚠
- p.Pro112Leu Single submitter ⚠
- p.Pro118Leu Single submitter ⚠
- p.Pro135Ser Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠
- p.Pro301Thr Single submitter ⚠
- p.Pro395Ala Single submitter ⚠
- p.Pro395Leu Single submitter Inborn genetic diseases ⚠
- p.Pro570Leu Single submitter ⚠
- p.Pro592Leu Single submitter ⚠
- p.Ser321Gly Single submitter ⚠
- p.Ser389Arg Single submitter ⚠
- p.Ser389Gly Single submitter Inborn genetic diseases ⚠
- p.Ser650Thr Single submitter Inborn genetic diseases ⚠
- p.Ser655Arg Single submitter Inborn genetic diseases ⚠
- p.Ser675= Single submitter
- p.Ser677Phe Single submitter Inborn genetic diseases
- p.Ser703fs Single submitter
- p.Ser709Ala Single submitter Inborn genetic diseases ⚠
- p.Ser709Pro Single submitter ⚠
- p.Ser709Tyr Single submitter Inborn genetic diseases ⚠
- p.Ser763Cys Single submitter
- p.Thr117Ser Single submitter ⚠
- p.Thr223Met Single submitter Inborn genetic diseases ⚠
- p.Thr388Ile Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠
- p.Trp206Cys Single submitter ⚠
- p.Tyr456Phe Single submitter ⚠
- p.Tyr575Asp Single submitter Inborn genetic diseases ⚠
- p.Val217Met Single submitter childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠
- p.Val356Met Single submitter ⚠
- c.1089+1G>A No assertion criteria childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder
- p.Arg668Leu No assertion criteria UBTF-related disorder
- p.Asp722Tyr No assertion criteria
- p.Gly661Cys No assertion criteria childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorder ⚠