VEGFC — 100 ClinVar variants
All ClinVar germline VEGFC variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 60 flagged for review →
3 Pathogenic · 3 Conflicting · 19 Benign · 1 Benign/Likely benign · 12 Likely benign · 62 Uncertain significance
Full VEGFC gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 60
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
VEGFC p.Glu58Lys
Conflicting
Single submitter
Inborn genetic diseases
-
VEGFC p.Gly269Arg
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 47
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
VEGFC p.Gln220Arg
Uncertain significance
Multiple submitters
lymphedema
-
VEGFC p.Ala112Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Ala239Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Ala258Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Ala28Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Ala41Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Ala48Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Arg134Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Arg161Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Arg255Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Arg300Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Arg332Gln
Uncertain significance
Single submitter
lymphatic malformation 4
-
VEGFC p.Arg61Trp
Uncertain significance
Single submitter
lymphatic malformation 4
-
VEGFC p.Arg94Thr
Uncertain significance
Single submitter
lymphatic malformation 4
- VEGFC p.Asn175Ile Uncertain significance Single submitter
-
VEGFC p.Asn246Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Asn321Asp
Uncertain significance
Single submitter
lymphatic malformation 4
-
VEGFC p.Asp216Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Asp270Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Asp287Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Asp55Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Gln327His
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Gln327Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Glu105Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- VEGFC p.Glu125Asp Uncertain significance Single submitter
-
VEGFC p.Gly163Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- VEGFC p.Gly21Arg Uncertain significance Single submitter
-
VEGFC p.His252Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Ile253Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Leu14Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Leu215Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Leu36Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Leu99Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Met212Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Phe324Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Phe6Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Pro154Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Pro20Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Pro230Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Pro355Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Ser179Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Thr116Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Thr200Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Thr338Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Tyr160Cys
Uncertain significance
Single submitter
lymphatic malformation 4
-
VEGFC p.Val318Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Arg386Gln
Uncertain significance
No assertion criteria
VEGFC-related disorder
Predictors split 11
The independent predictors disagree with each other — read with care.
-
VEGFC p.Ile122Val
Benign
Multiple submitters
lymphatic malformation 4
-
VEGFC p.Ala16Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- VEGFC p.Arg386Trp Conflicting Single submitter
-
VEGFC p.Asn331Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Gln172Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Phe186Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- VEGFC p.Pro325Leu Benign Single submitter
-
VEGFC p.Ser65Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Val136Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Val294Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
VEGFC p.Val318Phe
Uncertain significance
Single submitter
Inborn genetic diseases
All VEGFC variants
Pathogenic 3
- c.362-2A>T Single submitter
- p.Arg210Ter Single submitter lymphatic malformation 4
- p.Pro191fs No assertion criteria lymphatic malformation 4
Conflicting classifications of pathogenicity 3
- p.Arg386Trp Single submitter ⚠
- p.Glu58Lys Single submitter Inborn genetic diseases ⚠
- p.Gly269Arg Single submitter Inborn genetic diseases ⚠
Benign 19
- c.705-122C>T Multiple submitters
- c.705-178G>A Multiple submitters
- c.705-183G>A Multiple submitters
- c.811+100T>G Multiple submitters
- c.812-101A>G Multiple submitters
- p.Arg61Gln Multiple submitters lymphatic malformation 4
- p.Glu47Val Multiple submitters lymphatic malformation 4
- p.Ile122Val Multiple submitters lymphatic malformation 4 ⚠
- p.Pro191Ala Multiple submitters
- p.Pro191Arg Multiple submitters
- c.1145+277A>T Single submitter
- c.361+70dup Single submitter
- c.552+119_552+120insTT Single submitter
- c.552+268G>A Single submitter
- c.553-15G>T Single submitter
- p.Ala31dup Single submitter
- p.Arg210Gln Single submitter
- p.Lys375Gln Single submitter
- p.Pro325Leu Single submitter ⚠
Benign/Likely benign 1
- p.Ser12= Multiple submitters
Likely benign 12
- c.362-12A>G Single submitter
- c.705-14T>G Single submitter
- p.Ala28= Single submitter
- p.Asp261Asn Single submitter lymphatic malformation 4
- p.Gly5= Single submitter
- p.Val409= Single submitter lymphatic malformation 4
- c.148-10T>C No assertion criteria VEGFC-related disorder
- c.148-9C>T No assertion criteria VEGFC-related disorder
- p.Ala31del No assertion criteria VEGFC-related disorder
- p.Asn167= No assertion criteria VEGFC-related disorder
- p.Cys165= No assertion criteria VEGFC-related disorder
- p.Thr389= No assertion criteria VEGFC-related disorder
Uncertain significance 62
- p.Gln220Arg Multiple submitters lymphedema ⚠
- p.Ala112Thr Single submitter Inborn genetic diseases ⚠
- p.Ala16Asp Single submitter Inborn genetic diseases ⚠
- p.Ala239Thr Single submitter Inborn genetic diseases ⚠
- p.Ala258Ser Single submitter Inborn genetic diseases ⚠
- p.Ala28Val Single submitter Inborn genetic diseases ⚠
- p.Ala41Pro Single submitter Inborn genetic diseases ⚠
- p.Ala48Gly Single submitter Inborn genetic diseases ⚠
- p.Arg134Trp Single submitter Inborn genetic diseases ⚠
- p.Arg161Ser Single submitter Inborn genetic diseases ⚠
- p.Arg255Lys Single submitter Inborn genetic diseases ⚠
- p.Arg300Trp Single submitter Inborn genetic diseases ⚠
- p.Arg332Gln Single submitter lymphatic malformation 4 ⚠
- p.Arg61Trp Single submitter lymphatic malformation 4 ⚠
- p.Arg94Thr Single submitter lymphatic malformation 4 ⚠
- p.Asn175Ile Single submitter ⚠
- p.Asn246Ser Single submitter Inborn genetic diseases ⚠
- p.Asn321Asp Single submitter lymphatic malformation 4 ⚠
- p.Asn331Thr Single submitter Inborn genetic diseases ⚠
- p.Asp216Gly Single submitter Inborn genetic diseases ⚠
- p.Asp270Asn Single submitter Inborn genetic diseases ⚠
- p.Asp287Gly Single submitter Inborn genetic diseases ⚠
- p.Asp55Tyr Single submitter Inborn genetic diseases ⚠
- p.Asp67Asn Single submitter Inborn genetic diseases
- p.Gln172Lys Single submitter Inborn genetic diseases ⚠
- p.Gln327His Single submitter Inborn genetic diseases ⚠
- p.Gln327Leu Single submitter Inborn genetic diseases ⚠
- p.Glu105Gln Single submitter Inborn genetic diseases ⚠
- p.Glu125Asp Single submitter ⚠
- p.Glu68_Thr71delinsAsp Single submitter
- p.Gly163Arg Single submitter Inborn genetic diseases ⚠
- p.Gly21Arg Single submitter ⚠
- p.Gly305Ter Single submitter VEGFC-related disorder
- p.His252Asn Single submitter Inborn genetic diseases ⚠
- p.Ile253Met Single submitter Inborn genetic diseases ⚠
- p.Leu14Phe Single submitter Inborn genetic diseases ⚠
- p.Leu215Gln Single submitter Inborn genetic diseases ⚠
- p.Leu36Val Single submitter Inborn genetic diseases ⚠
- p.Leu99Phe Single submitter Inborn genetic diseases ⚠
- p.Met212Val Single submitter Inborn genetic diseases ⚠
- p.Phe186Leu Single submitter Inborn genetic diseases ⚠
- p.Phe324Leu Single submitter Inborn genetic diseases ⚠
- p.Phe6Cys Single submitter Inborn genetic diseases ⚠
- p.Phe7del Single submitter
- p.Pro154Ser Single submitter Inborn genetic diseases ⚠
- p.Pro20Leu Single submitter Inborn genetic diseases ⚠
- p.Pro230Thr Single submitter Inborn genetic diseases ⚠
- p.Pro348Ser Single submitter Inborn genetic diseases
- p.Pro355Arg Single submitter Inborn genetic diseases ⚠
- p.Ser179Asn Single submitter Inborn genetic diseases ⚠
- p.Ser202Asn Single submitter Inborn genetic diseases
- p.Ser65Gly Single submitter Inborn genetic diseases ⚠
- p.Thr116Ile Single submitter Inborn genetic diseases ⚠
- p.Thr200Ala Single submitter Inborn genetic diseases ⚠
- p.Thr338Ile Single submitter Inborn genetic diseases ⚠
- p.Tyr160Cys Single submitter lymphatic malformation 4 ⚠
- p.Val136Ala Single submitter Inborn genetic diseases ⚠
- p.Val136Met Single submitter Inborn genetic diseases
- p.Val294Phe Single submitter Inborn genetic diseases ⚠
- p.Val318Ile Single submitter Inborn genetic diseases ⚠
- p.Val318Phe Single submitter Inborn genetic diseases ⚠
- p.Arg386Gln No assertion criteria VEGFC-related disorder ⚠