VIM — 127 ClinVar variants
All ClinVar germline VIM variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 61 flagged for review →
1 Pathogenic · 1 Pathogenic/Likely pathogenic · 1 Likely pathogenic · 23 Benign · 4 Benign/Likely benign · 31 Likely benign · 66 Uncertain significance
Full VIM gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 61
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors lean, ClinVar uncertain 43
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
VIM p.Asp360Glu
Uncertain significance
Multiple submitters
cataract 30
-
VIM p.Leu164Val
Uncertain significance
Multiple submitters
cataract 30
-
VIM p.Thr458Ala
Uncertain significance
Multiple submitters
cataract 30
-
VIM p.Val272Ile
Uncertain significance
Multiple submitters
cataract 30
- VIM p.Ala89Gly Uncertain significance Single submitter
- VIM p.Arg170Cys Uncertain significance Single submitter
- VIM p.Arg217Ser Uncertain significance Single submitter
- VIM p.Arg222Cys Uncertain significance Single submitter
-
VIM p.Arg28Gly
Uncertain significance
Single submitter
cataract 30
-
VIM p.Arg342Gly
Uncertain significance
Single submitter
cataract 30
-
VIM p.Arg381Cys
Uncertain significance
Single submitter
cataract 30
- VIM p.Asn422Thr Uncertain significance Single submitter
- VIM p.Asp209Asn Uncertain significance Single submitter
-
VIM p.Asp209Gly
Uncertain significance
Single submitter
cataract 30
- VIM p.Gln204His Uncertain significance Single submitter
-
VIM p.Gln208Arg
Uncertain significance
Single submitter
cataract 30
- VIM p.Gln359Arg Uncertain significance Single submitter
- VIM p.Gln453Lys Uncertain significance Single submitter
- VIM p.Glu103Gln Uncertain significance Single submitter
-
VIM p.Glu156Asp
Uncertain significance
Single submitter
cataract 30
-
VIM p.Glu180Lys
Uncertain significance
Single submitter
cataract 30
- VIM p.Glu407Lys Uncertain significance Single submitter
- VIM p.Glu408Lys Uncertain significance Single submitter
- VIM p.Glu448Gly Uncertain significance Single submitter
- VIM p.Gly142Ser Uncertain significance Single submitter
- VIM p.Gly19Ser Uncertain significance Single submitter
-
VIM p.His253Arg
Uncertain significance
Single submitter
cataract 30
- VIM p.Ile362Asn Uncertain significance Single submitter
- VIM p.Leu135Phe Uncertain significance Single submitter
- VIM p.Leu189Phe Uncertain significance Single submitter
- VIM p.Met183Leu Uncertain significance Single submitter
- VIM p.Phe351Val Uncertain significance Single submitter
- VIM p.Phe96Leu Uncertain significance Single submitter
- VIM p.Ser278Asn Uncertain significance Single submitter
- VIM p.Ser438Pro Uncertain significance Single submitter
- VIM p.Ser49Arg Uncertain significance Single submitter
- VIM p.Thr399Ala Uncertain significance Single submitter
- VIM p.Tyr30Cys Uncertain significance Single submitter
-
VIM p.Val173Ala
Uncertain significance
Single submitter
VIM-related disorder
- VIM p.Val31Leu Uncertain significance Single submitter
- VIM p.Val353Ile Uncertain significance Single submitter
- VIM p.Val434Phe Uncertain significance Single submitter
- VIM p.Val454Ile Uncertain significance Single submitter
Predictors split 18
The independent predictors disagree with each other — read with care.
-
VIM p.Arg45His
Uncertain significance
Multiple submitters
cataract 30
-
VIM p.Ala216Thr
Uncertain significance
Single submitter
cataract 30
- VIM p.Ala287Val Uncertain significance Single submitter
-
VIM p.Arg304Gln
Uncertain significance
Single submitter
cataract 30
- VIM p.Arg342His Uncertain significance Single submitter
- VIM p.Arg364Cys Uncertain significance Single submitter
-
VIM p.Arg378His
Benign
Single submitter
cataract 30
- VIM p.Arg381His Uncertain significance Single submitter
-
VIM p.Glu200Gln
Uncertain significance
Single submitter
cataract 30
- VIM p.Glu349Gly Uncertain significance Single submitter
-
VIM p.Gly16Ser
Uncertain significance
Single submitter
cataract 30
- VIM p.Ile92Met Uncertain significance Single submitter
-
VIM p.Met344Ile
Uncertain significance
Single submitter
cataract 30
-
VIM p.Met372Thr
Uncertain significance
Single submitter
cataract 30
- VIM p.Phe114Leu Uncertain significance Single submitter
- VIM p.Ser49Asn Uncertain significance Single submitter
- VIM p.Ser8Leu Uncertain significance Single submitter
- VIM p.Arg345His Uncertain significance No assertion criteria
All VIM variants
Pathogenic 1
- p.Glu151Lys No assertion criteria cataract 30
Pathogenic/Likely pathogenic 1
- p.Val6fs No assertion criteria Developmental cataract
Likely pathogenic 1
- p.Leu387Pro No assertion criteria syndrome with premature-aging
Benign 23
- c.1008+99G>A Multiple submitters
- c.1009-10C>T Multiple submitters cataract 30
- c.1229+115G>A Multiple submitters
- c.1229+89C>G Multiple submitters
- c.1274-122C>G Multiple submitters
- c.564-139C>T Multiple submitters
- c.882+136C>T Multiple submitters
- c.-147-165G>C Multiple submitters
- c.-22G>C Multiple submitters cataract 30
- c.-27C>T Multiple submitters
- c.*247C>T Multiple submitters
- c.*292G>T Multiple submitters
- p.Asp271= Multiple submitters cataract 30
- c.1360-200G>A Single submitter
- c.1360-7dup Single submitter cataract 30
- c.564-274dup Single submitter
- c.624+210del Single submitter
- c.624+210dup Single submitter
- c.883-287C>T Single submitter
- p.Arg378His Single submitter cataract 30 ⚠
- p.Leu269= Single submitter cataract 30
- p.Thr33= Single submitter cataract 30
- p.Thr94= Single submitter cataract 30
Benign/Likely benign 4
- c.1008+18A>G Multiple submitters cataract 30
- c.1360-7del Multiple submitters cataract 30
- c.720+18C>T Multiple submitters cataract 30
- p.Ser293= Multiple submitters cataract 30
Likely benign 31
- c.1360-18G>T Multiple submitters cataract 30
- c.564-27C>A Multiple submitters
- c.625-136C>T Multiple submitters
- c.882+7A>C Multiple submitters cataract 30
- c.-147-284C>T Multiple submitters
- c.-147-69G>C Multiple submitters
- c.*55C>T Multiple submitters
- p.Asp181Ala Multiple submitters cataract 30
- p.His238= Multiple submitters cataract 30
- p.Val254= Multiple submitters cataract 30
- c.1009-36A>G Single submitter
- c.1009-8C>A Single submitter cataract 30
- c.1230-208T>C Single submitter
- c.1360-17T>G Single submitter cataract 30
- c.624+17C>G Single submitter cataract 30
- c.624+7A>C Single submitter cataract 30
- c.624+7A>G Single submitter cataract 30
- c.720+19G>A Single submitter
- c.882+20G>A Single submitter cataract 30
- p.Asn128= Single submitter cataract 30
- p.Asn456= Single submitter cataract 30
- p.Asp385= Single submitter
- p.Gln141= Single submitter cataract 30
- p.Gln250Arg Single submitter cataract 30
- p.Glu109= Single submitter
- p.Glu329= Single submitter cataract 30
- p.Glu374= Single submitter cataract 30
- p.Glu407= Single submitter
- p.Val171= Single submitter cataract 30
- p.Val258= Single submitter cataract 30
- p.Val330= Single submitter cataract 30
Uncertain significance 66
- p.Arg45His Multiple submitters cataract 30 ⚠
- p.Asp360Glu Multiple submitters cataract 30 ⚠
- p.Leu164Val Multiple submitters cataract 30 ⚠
- p.Thr458Ala Multiple submitters cataract 30 ⚠
- p.Val272Ile Multiple submitters cataract 30 ⚠
- c.1008+1G>A Single submitter cataract 30
- p.Ala216Thr Single submitter cataract 30 ⚠
- p.Ala287Val Single submitter ⚠
- p.Ala332Thr Single submitter
- p.Ala89Gly Single submitter ⚠
- p.Arg170Cys Single submitter ⚠
- p.Arg217Ser Single submitter ⚠
- p.Arg222Cys Single submitter ⚠
- p.Arg28Gly Single submitter cataract 30 ⚠
- p.Arg304Gln Single submitter cataract 30 ⚠
- p.Arg342Gly Single submitter cataract 30 ⚠
- p.Arg342His Single submitter ⚠
- p.Arg364Cys Single submitter ⚠
- p.Arg381Cys Single submitter cataract 30 ⚠
- p.Arg381His Single submitter ⚠
- p.Asn422Thr Single submitter ⚠
- p.Asp209Asn Single submitter ⚠
- p.Asp209Gly Single submitter cataract 30 ⚠
- p.Gln204His Single submitter ⚠
- p.Gln208Arg Single submitter cataract 30 ⚠
- p.Gln359Arg Single submitter ⚠
- p.Gln453Lys Single submitter ⚠
- p.Glu103Gln Single submitter ⚠
- p.Glu153del Single submitter cataract 30
- p.Glu156Asp Single submitter cataract 30 ⚠
- p.Glu180Lys Single submitter cataract 30 ⚠
- p.Glu200Gln Single submitter cataract 30 ⚠
- p.Glu349Gly Single submitter ⚠
- p.Glu407Lys Single submitter ⚠
- p.Glu408Lys Single submitter ⚠
- p.Glu448Gly Single submitter ⚠
- p.Gly142Ser Single submitter ⚠
- p.Gly16Ser Single submitter cataract 30 ⚠
- p.Gly19Ser Single submitter ⚠
- p.His253Arg Single submitter cataract 30 ⚠
- p.Ile362Asn Single submitter ⚠
- p.Ile92Met Single submitter ⚠
- p.Leu135Phe Single submitter ⚠
- p.Leu189Phe Single submitter ⚠
- p.Leu40Arg Single submitter
- p.Met183Leu Single submitter ⚠
- p.Met344Ile Single submitter cataract 30 ⚠
- p.Met372Thr Single submitter cataract 30 ⚠
- p.Phe114Leu Single submitter ⚠
- p.Phe351Val Single submitter ⚠
- p.Phe96Leu Single submitter ⚠
- p.Ser278Asn Single submitter ⚠
- p.Ser438Pro Single submitter ⚠
- p.Ser459fs Single submitter cataract 30
- p.Ser49Arg Single submitter ⚠
- p.Ser49Asn Single submitter ⚠
- p.Ser8Leu Single submitter ⚠
- p.Thr399Ala Single submitter ⚠
- p.Thr94Ile Single submitter
- p.Tyr30Cys Single submitter ⚠
- p.Val173Ala Single submitter VIM-related disorder ⚠
- p.Val31Leu Single submitter ⚠
- p.Val353Ile Single submitter ⚠
- p.Val434Phe Single submitter ⚠
- p.Val454Ile Single submitter ⚠
- p.Arg345His No assertion criteria ⚠