ZFR — 294 ClinVar variants

All ClinVar germline ZFR variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 139 flagged for review →

2 Conflicting · 10 Benign · 1 Benign/Likely benign · 123 Likely benign · 158 Uncertain significance

Full ZFR gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 139

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 2

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 108

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 29

The independent predictors disagree with each other — read with care.

All ZFR variants

Conflicting classifications of pathogenicity 2

  • p.Ala517Thr Single submitter Pure or complex autosomal recessive spastic paraplegia ⚠
  • p.Met466Val Single submitter Pure or complex autosomal recessive spastic paraplegia ⚠

Benign 10

  • c.1032+8C>T Multiple submitters Pure or complex autosomal recessive spastic paraplegia
  • c.2835+11C>T Multiple submitters Pure or complex autosomal recessive spastic paraplegia
  • p.Asp803= Multiple submitters Pure or complex autosomal recessive spastic paraplegia
  • p.Glu651= Multiple submitters Pure or complex autosomal recessive spastic paraplegia
  • p.Ile520Thr Multiple submitters Pure or complex autosomal recessive spastic paraplegia
  • p.Val461Ile Multiple submitters Pure or complex autosomal recessive spastic paraplegia
  • c.137+11C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2835+16C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.38-15T>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Gln178= Single submitter Pure or complex autosomal recessive spastic paraplegia

Benign/Likely benign 1

  • c.1713+6T>C Multiple submitters Pure or complex autosomal recessive spastic paraplegia

Likely benign 123

  • c.1032+11T>C Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.1032+9G>A Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.1033-16T>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.1033-6A>C Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.1225-19G>A Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.137+14G>A Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.137+15C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.137+16C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.137+18del Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.137+18T>A Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.137+19C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.138-7A>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.1517-19C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.1713+8A>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.1714-5C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.1833+19A>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.1834-11T>C Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.1834-19G>A Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.1979+17T>C Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.1980-17C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2142+11A>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2142+13G>A Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2348+7T>C Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2349-10T>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2349-12A>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2499+11T>C Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2499+15A>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2500-13C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2500-17T>C Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2500-20T>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2740-10T>C Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2835+13T>C Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2835+8G>A Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2947+14T>C Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2947+14T>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2948-20C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2948-4G>A Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.2948-8T>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.3045+9A>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.3046-15CT[2] Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.3046-20T>A Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.3046-8T>C Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.3046-9_3046-8del Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.38-5C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.38-8C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.421-13dup Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.421-9T>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.565+16C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.565+8T>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.566-9C>T Single submitter Pure or complex autosomal recessive spastic paraplegia
  • c.784+18T>G Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ala103= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ala170= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ala173= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ala240= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ala294= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ala295= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ala361= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ala37= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ala462= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ala69= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Asn1047= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Asn805= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Asp1053= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Asp519= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Asp892= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Cys387= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Cys587= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Gln1006= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Gln122= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Gln284= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Gln286= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Gln366= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Gln430= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Gln44= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Gln632= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Gln675= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Glu778= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Gly773= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Gly779= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ile1010= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ile330= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ile338= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ile750= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Leu1020= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Leu17= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Leu319= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Leu362= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Pro1036= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Pro220= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Pro229= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Pro425= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Pro442= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ser142= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ser266= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ser475= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ser884= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Thr165= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Thr211= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Thr242= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Thr32= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Thr463= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Thr470Met Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Thr490= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Thr499= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Thr544= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Thr60= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Thr819= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Thr883= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Thr938= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Tyr118= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Tyr280= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Tyr726= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Tyr840= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Val409= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Val561= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Val564= Single submitter Pure or complex autosomal recessive spastic paraplegia
  • p.Ala439= No assertion criteria ZFR-related disorder
  • p.Ala714= No assertion criteria ZFR-related disorder
  • p.Gln205= No assertion criteria ZFR-related disorder
  • p.Gly918= No assertion criteria ZFR-related disorder
  • p.Gly965= No assertion criteria ZFR-related disorder
  • p.Thr523= No assertion criteria ZFR-related disorder

Uncertain significance 158