NLRC4 p.Pro819=
c.2457C>G · rs2466726758 · VCV3026653
Likely benign
Single submitter
Classification
Likely benign
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
gnomAD v4.1
Absent
absent from gnomAD v4.1
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP 1.6 | GERP 0.24, phastCons 0.94 |
| Overall | ||
| CADD | 5.689 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Absent from gnomAD v4.1. Not observed in any sequenced alleles — a rarity signal (ACMG PM2-supporting), not evidence of pathogenicity on its own.
Variant & gene context
- Gene
- NLRC4
- Protein
- p.Pro819=
- Coding
- c.2457C>G
- MANE Select
- NM_001199138
- dbSNP
- rs2466726758
- Type
- single nucleotide variant
- Location
- chr2:32238196 (GRCh38)
- Gene constraint
- LOEUF 0.948 · pLI <0.01 (gnomAD)
- Structure
- AlphaFold pLDDT 85.18 · 6 PDB
Similar variants
- NLRC4 p.Ser445Pro Pathogenic/Likely pathogenic ★★ ⚠ same type
- NLRC4 p.Val341Ala Pathogenic ★★ ⚠ same type
- NLRC4 c.2258-3C>G Uncertain significance ★★ same type
- NLRC4 c.2351-8T>G Uncertain significance ★★ same type
- NLRC4 p.Ala1018Thr Uncertain significance ★★ ⚠ same type
- NLRC4 p.Ala193Pro Uncertain significance ★★ ⚠ same type
- NLRC4 p.Ala234Val Uncertain significance ★★ ⚠ same type
- NLRC4 p.Ala318Pro Uncertain significance ★★ ⚠ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/nlrc4-p-pro819 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown