PPARG p.Lys33=
c.99G>A · rs753619817 · VCV2719983
Likely benign
Single submitter
Classification
Likely benign
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 2 submitters
gnomAD v4.1
Rare
very rare (popmax 0.00267%, afr)
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP 1.7 | GERP -0.34, phastCons 1 |
| Overall | ||
| CADD | 8.243 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Grpmax group
0.00267%
African / African-American · 2/75,022 alleles
Filtering AF
0.000442%
ClinGen BA1/BS1 input
FAF95, joint · FAF99 0.000166%
Overall
0.000205%
3/1,461,678 alleles · very rare
| Ancestry group | Frequency | 1 in |
|---|---|---|
| African / African-Americangrpmax | 0.00267% | 37,511 |
| Admixed American | 0.00167% | 59,986 |
Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.
Variant & gene context
- Gene
- PPARG
- Protein
- p.Lys33=
- Coding
- c.99G>A
- MANE Select
- NM_138711
- dbSNP
- rs753619817
- Type
- single nucleotide variant
- Location
- chr3:12379810 (GRCh38)
- Gene constraint
- LOEUF 0.628 · pLI 0.21 (gnomAD)
- Structure
- AlphaFold pLDDT 76.11 · 321 PDB
Similar variants
- PPARG p.Arg164Gln Likely pathogenic ★★ same type
- PPARG p.Arg395Cys Pathogenic/Likely pathogenic ★★ same type
- PPARG p.Arg395His Pathogenic/Likely pathogenic ★★ same type
- PPARG p.Pro465Leu Pathogenic/Likely pathogenic ★★ same type
- PPARG p.Tyr121Cys Pathogenic/Likely pathogenic ★★ same type
- PPARG c.-8A>G Uncertain significance ★★ ⚠ same type
- PPARG p.Arg110His Uncertain significance ★★ ⚠ same type
- PPARG p.Arg151Gln Uncertain significance ★★ ⚠ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/pparg-p-lys33 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown