PPARG p.Ser287=
c.861C>T · rs13306746 · VCV709025
Likely benign
Multiple submitters
Classification
Likely benign
ClinVar
Review
Multiple submitters ★★☆☆
ClinVar · 4 submitters
gnomAD v4.1
Rare
ultra-rare (popmax 0.02%, eas)
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP -10 | GERP -4.6 |
| Overall | ||
| CADD | 0.744 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Grpmax group
0.02%
East Asian · 9/44,896 alleles
Filtering AF
0.0104%
ClinGen BA1/BS1 input
FAF95, joint · FAF99 0.00779%
Overall
0.00161%
26/1,613,972 alleles · ultra-rare
| Ancestry group | Frequency | 1 in |
|---|---|---|
| East Asiangrpmax | 0.02% | 4,988 |
| Admixed American | 0.00833% | 11,998 |
| African / African-American | 0.004% | 24,971 |
| Remaining individualsnot grpmax-eligible | 0.0016% | 62,480 |
| Finnishnot grpmax-eligible | 0.00156% | 64,018 |
| South Asian | 0.0011% | 91,070 |
| European (non-Finnish) | 0.000508% | 196,667 |
Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.
Variant & gene context
- Gene
- PPARG
- Protein
- p.Ser287=
- Coding
- c.861C>T
- MANE Select
- NM_138711
- dbSNP
- rs13306746
- Type
- single nucleotide variant
- Location
- chr3:12416835 (GRCh38)
- Gene constraint
- LOEUF 0.628 · pLI 0.21 (gnomAD)
- Structure
- AlphaFold pLDDT 76.11 · 321 PDB
- Residue 287
- the nr lbd domain; an α-helix
Similar variants
- PPARG p.Ser287Pro Uncertain significance ★ ⚠ same residue
- PPARG p.Arg164Gln Likely pathogenic ★★ same type
- PPARG p.Arg395Cys Pathogenic/Likely pathogenic ★★ same type
- PPARG p.Arg395His Pathogenic/Likely pathogenic ★★ same type
- PPARG p.Pro465Leu Pathogenic/Likely pathogenic ★★ same type
- PPARG p.Tyr121Cys Pathogenic/Likely pathogenic ★★ same type
- PPARG c.-8A>G Uncertain significance ★★ ⚠ same type
- PPARG p.Arg110His Uncertain significance ★★ ⚠ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/pparg-p-ser287 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown