Is PRKAG2 p.Pro441= (c.1323A>G) pathogenic?

PRKAG2 p.Pro441= (c.1323A>G) is classified Likely benign in PRKAG2 (ClinVar, Multiple submitters, 2 submitters; last evaluated 2025-03-23). Absent from gnomAD v4.1; Associated with cardiomyopathy.

What condition is associated with PRKAG2 p.Pro441= (c.1323A>G)?

PRKAG2 p.Pro441= (c.1323A>G) is associated with cardiomyopathy (ClinVar).

How common is PRKAG2 p.Pro441= (c.1323A>G) in the general population?

PRKAG2 p.Pro441= (c.1323A>G) is absent from gnomAD v4.1 (gnomAD).

PRKAG2 p.Pro441=

c.1323A>G · VCV3894174

Likely benign Multiple submitters

Classification

Likely benign

ClinVar

Review

Multiple submitters ★★☆☆

ClinVar · 2 submitters

gnomAD v4.1

Absent

absent from gnomAD v4.1

Conditions

cardiomyopathy

Computational evidence

Protein change
Missense predictors do not apply to this variant type; conservation carries the signal.
Splicing
SpliceAI	—	not assessed · no allele here is in the release
Constraint at this position
Conservation	phyloP -12	GERP -5.5
Overall
CADD	0.202	PHRED · no single calibrated threshold — expert panels disagree

Population frequency

gnomAD v4.1 · exomes + genomes

Absent from gnomAD v4.1. Not observed in any sequenced alleles — a rarity signal (ACMG PM2-supporting), not evidence of pathogenicity on its own.

Variant & gene context

Gene: PRKAG2
Protein: p.Pro441=
Coding: c.1323A>G
MANE Select: NM_016203
Type: single nucleotide variant
Location: chr7:151565796 (GRCh38)
Gene constraint: LOEUF 0.582 · pLI 0.20 · ClinGen HI 0/3 (gnomAD)
Structure: AlphaFold pLDDT 67.24
Residue 441: the cbs 3 domain

Full PRKAG2 gene report on Sugi Atlas → Gene function, pathways, protein structure, interactions & more

Disease context

cardiomyopathy — disease report on Sugi Atlas → Associated genes, phenotypes, clinical trials & treatments

Similar variants

PRKAG2 p.Pro441Ser Uncertain significance ★★ same residue
PRKAG2 p.Pro441Thr Uncertain significance ★ ⚠ same residue
PRKAG2 p.Arg302Gln Pathogenic ★★ same condition
PRKAG2 p.Phe293Leu Pathogenic/Likely pathogenic ★★ same condition
PRKAG2 c.1052-6A>G Uncertain significance ★★ same condition
PRKAG2 c.114+3G>A Uncertain significance ★★ same condition
PRKAG2 c.187-3C>T Uncertain significance ★★ same condition
PRKAG2 c.466+2T>G Uncertain significance ★★ same condition

Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →

Cite Sugi Variant

Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/prkag2-p-pro441 (accessed [today's date]).

Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown