RMND1 p.Pro55=
c.165T>A · rs2485963166 · VCV2700152
Likely benign
Single submitter
Classification
Likely benign
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
gnomAD v4.1
Absent
absent from gnomAD v4.1
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP -0.13 | GERP -3.8 |
| Overall | ||
| CADD | 4.902 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Absent from gnomAD v4.1. Not observed in any sequenced alleles — a rarity signal (ACMG PM2-supporting), not evidence of pathogenicity on its own.
Variant & gene context
- Gene
- RMND1
- Protein
- p.Pro55=
- Coding
- c.165T>A
- MANE Select
- NM_017909
- dbSNP
- rs2485963166
- Type
- single nucleotide variant
- Location
- chr6:151445647 (GRCh38)
- Gene constraint
- LOEUF 0.851 · pLI 0.02 (gnomAD)
- Structure
- AlphaFold pLDDT 70.28
Similar variants
- RMND1 c.504+1G>A Pathogenic/Likely pathogenic ★★ same type
- RMND1 p.Arg23Ter Pathogenic/Likely pathogenic ★★ same type
- RMND1 p.Arg417Gln Pathogenic/Likely pathogenic ★★ ⚠ same type
- RMND1 p.Asn238Ser Pathogenic ★★ same type
- RMND1 p.Asp205Tyr Likely pathogenic ★★ ⚠ same type
- RMND1 p.Ter450Arg Pathogenic/Likely pathogenic ★★ same type
- RMND1 p.Ter450Ser Pathogenic/Likely pathogenic ★★ same type
- RMND1 p.Tyr196Ter Likely pathogenic ★★ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/rmnd1-p-pro55 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown