Sy-5609

Sy-5609

SCHEMBL29855824

CC1(C)CC[C@H](Nc2ncc(C(F)(F)F)c(-c3c[nH]c4c(P(C)(C)=O)c(C#N)ccc34)n2)CN1

nearest known ligand 1.00 ✓ in ChEMBL — recovers established targets

Full drug profile on Sugi Atlas →

Predicted protein targets (top 11)

geneUniProtsupporting neighboursconfidence
▸ CDK7 P50613 15/20 1.00
▸ CCNH P51946 15/20 1.00
▸ CCNK O75909 13/20 1.00
▸ CDK12 Q9NYV4 13/20 1.00
▸ MNAT1 P51948 11/20 1.00
▸ CCNT1 O60563 10/20 1.00
▸ CCNE1 P24864 10/20 1.00
▸ CDK2 P24941 10/20 1.00
▸ CDK9 P50750 10/20 1.00
▸ CYP2D6 P10635 1/20 1.00
▸ MAP2K5 Q13163 1/20 0.51

Click a target to see other patent compounds predicted against it — the reverse direction, in place.

Similar compounds — the chemically nearest patent molecules

Nearest neighbours by Morgan-fingerprint cosine across the patent-compound collection, with each neighbour's top predicted target and the predicted targets it shares with this molecule.

Compoundsimilaritytop predictedshared targets
Sy-5609 SCHEMBL22076285 1.00 CDK7 (1.00) CDK7CCNHCCNKCDK12MNAT1
Sy-5609 SCHEMBL22076284 1.00 CDK7 (1.00) CDK7CCNHCCNKCDK12MNAT1
SCHEMBL24308148 0.93 CCNK (0.86) CDK7CCNHCCNKCDK12MNAT1
SCHEMBL25593809 0.93 CDK7 (0.86) CDK7CCNHCCNKCDK12MNAT1
SCHEMBL25593099 0.92 CCNK (0.85) CDK7CCNHCCNKCDK12MNAT1
SCHEMBL24588082 0.89 CDK7 (0.81) CDK7CCNHCCNKCDK12MNAT1
SCHEMBL24588870 0.88 CDK7 (0.79) CDK7CCNHCCNKCDK12MNAT1
SCHEMBL24588122 0.88 CDK7 (0.79) CDK7CCNHCCNKCDK12MNAT1
SCHEMBL26327182 0.88 CDK7 (0.79) CDK7CCNHCCNKCDK12MNAT1
SCHEMBL22076294 0.88 CCNK (0.79) CDK7CCNHCCNKCDK12MNAT1

Similarity is cosine over the 2,048-bit Morgan fingerprint (≈ Tanimoto). Identical fingerprints score 1.00.

Patent provenance — the patents this molecule appears in, and who filed them

Claimed or disclosed in 48 patents — showing the first 20. claimed = in the patent's claims; disclosed = body only.

PatentTitleAssigneePublishedPriorityFilingCountryStatus
EP-4695235-A1 NOVEL GSPT1 DEGRADER AND USE THEREOF Cyrus Therapeutics Inc. (KR) 2026-02-18 — — EP claimed
US-20250367222-A1 TREATMENTS FOR CANCERS DRIVEN BY DNAJB1-PRKACA GENE FUSIONS WISCONSIN ALUMNI RESEARCH FOUNDATION (US) 2025-12-04 — — US claimed
US-20250221989-A1 PHARMACEUTICAL COMPOSITION, USE THEREOF, AND METHOD FOR TREATING CANCER GENFLEET THERAPEUTICS (SHANGHAI) INC. (CN) 2025-07-10 — — US claimed
EP-4529926-A1 METHOD FOR TREATING CANCER BY COMBINING ALKYLATING AGENT PRODRUG AND CELL CYCLE INHIBITOR Ascentawits Pharmaceuticals, Ltd. (CN) 2025-04-02 — — EP claimed
EP-4506004-A1 PHARMACEUTICAL COMPOSITION, USE THEREOF, AND METHOD FOR TREATING CANCER Genfleet Therapeutics (Shanghai) Inc. (CN) 2025-02-12 — — EP claimed
CN-119233822-A Methods of treating cancer using alkylating agent prodrugs and cell cycle inhibitors in combination 深圳艾欣达伟医药科技有限公司 2024-12-31 — — CN claimed
WO-2024215130-A1 NOVEL GSPT1 DEGRADER AND USE THEREOF CYRUS THERAPEUTICS INC. (KR) 2024-10-17 — — WO claimed
WO-2023226959-A1 METHOD FOR TREATING CANCER BY COMBINING ALKYLATING AGENT PRODRUG AND CELL CYCLE INHIBITOR 深圳艾欣达伟医药科技有限公司 2023-11-30 — — WO claimed
WO-2023186075-A1 PHARMACEUTICAL COMPOSITION, USE THEREOF, AND METHOD FOR TREATING CANCER 劲方医药科技(上海)有限公司 2023-10-05 — — WO claimed
CN-116327956-A Pharmaceutical composition, use thereof and method for treating cancer 劲方医药科技(上海)有限公司 2023-06-27 — — CN claimed
US-20220288067-A1 TREATMENT OF CANCER WITH CDK INHIBITORS THE TRUSTEES OF THE UNIVERSITY OF PENNSYLVANIA (US) 2022-09-15 — — US claimed
EP-4695235-A1 NOVEL GSPT1 DEGRADER AND USE THEREOF Cyrus Therapeutics Inc. (KR) 2026-02-18 — — EP disclosed
EP-4658641-A1 NOVEL COMPOUNDS THAT CAN BE USED AS THERAPEUTIC AGENTS Xeniom GmbH (DE) 2025-12-10 — — EP disclosed
US-20250367222-A1 TREATMENTS FOR CANCERS DRIVEN BY DNAJB1-PRKACA GENE FUSIONS WISCONSIN ALUMNI RESEARCH FOUNDATION (US) 2025-12-04 — — US disclosed
US-20250283178-A1 FOXC1 EXPRESSION AS A COMPLEMENTARY DIAGNOSTIC ASSAY FOR PREDICTING EFFICACY OF ONCOLOGY DRUGS AND DRUG COMBINATION REGIMENS AND METHODS FOR USE 3N DIAGNOSTICS LTD. (GB) 2025-09-11 — — US disclosed
CN-115819406-B Synthesis method of 3- (4-pyrimidine) -1H-indole compound 淄博百极荣创医药科技有限公司 2023-06-02 — — CN disclosed
WO-2023040998-A1 A CYCLIN-DEPENDENT KINASE INHIBITOR Taizhou Eoc Pharma Co., Ltd. (CN) 2023-03-23 — — WO disclosed
CN-115819406-A Synthetic method of 3- (4-pyrimidine) -1H-indole compound 淄博百极荣创医药科技有限公司 2023-03-21 — — CN disclosed
CN-115583946-A Heterocyclic compounds and their use as CDK inhibitors 赛诺哈勃药业(成都)有限公司 2023-01-10 — — CN disclosed
US-20220288067-A1 TREATMENT OF CANCER WITH CDK INHIBITORS THE TRUSTEES OF THE UNIVERSITY OF PENNSYLVANIA (US) 2022-09-15 — — US disclosed

Patent text — is the patent's own abstract consistent with the prediction?

For each of this compound's patents that has machine-readable text (3 of them — usually the abstract, not the full specification), we ask MedCPT which protein the text reads most about, and where the chemistry-predicted target lands among 4885 human targets. A high rank means the patent's own wording is consistent with the prediction — a weak, independent signal, not proof of activity.

PatentTitleText reads most aboutPredicted target · text-rank
US-20250221989-A1 PHARMACEUTICAL COMPOSITION, USE THEREOF, AND METHOD FOR TREATING CANCER KRAS, NRAS, HRAS CDK7 133/4885CCNH 373/4885CCNK 156/4885
US-20220288067-A1 TREATMENT OF CANCER WITH CDK INHIBITORS CDK3, CDK4, CDK1 CDK7 18/4885CCNH 21/4885CCNK 8/4885
US-20250367222-A1 TREATMENTS FOR CANCERS DRIVEN BY DNAJB1-PRKACA GENE FUSIONS CDK9, CDC73, CDK4 CDK7 10/4885CCNH 185/4885CCNK 20/4885

“Text reads most about” is the patent abstract's nearest protein in MedCPT space (background-debiased). Only ~1.4% of patents have machine-readable text, so most compounds won't have this panel.

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