SCHEMBL3540422

SCHEMBL3540422

N#Cc1cccc(-n2c(C(=O)N3CCC(F)(F)CC3)cc3cc(C(=O)N4CCN(C5CCC5)CC4)ccc32)c1

nearest known ligand 0.49

Predicted protein targets (top 11)

geneUniProtsupporting neighboursconfidence
HRH3 Q9Y5N1 8/20 0.49
KCNH2 Q12809 1/20 0.48
MGLL Q99685 4/20 0.44
SLC6A4 P31645 1/20 0.42
HTT P42858 1/20 0.40
HPGD P15428 1/20 0.40
EGLN1 Q9GZT9 1/20 0.39
L3MBTL1 Q9Y468 2/20 0.39
L3MBTL3 Q96JM7 1/20 0.39
KDM4E B2RXH2 1/20 0.38
ALDH1A1 P00352 1/20 0.38

Click a target to see other patent compounds predicted against it — the reverse direction, in place.

Similar compounds — the chemically nearest patent molecules

Nearest neighbours by Morgan-fingerprint cosine across the patent-compound collection, with each neighbour's top predicted target and the predicted targets it shares with this molecule.

Compoundsimilaritytop predictedshared targets
SCHEMBL3539416 0.98 HRH3 (0.47) HRH3KCNH2MGLLSLC6A4HTT
SCHEMBL3534510 0.91 HRH3 (0.51) HRH3KCNH2MGLLSLC6A4EGLN1
SCHEMBL3543369 0.89 HRH3 (0.49) HRH3KCNH2MGLLSLC6A4HTT
SCHEMBL3535868 0.88 HPGD (0.52) HRH3KCNH2HTTHPGDL3MBTL1
SCHEMBL3539404 0.88 HRH3 (0.49) HRH3KCNH2MGLLSLC6A4HTT
SCHEMBL27739834 0.88 HRH3 (0.49) HRH3KCNH2MGLLSLC6A4HTT
SCHEMBL3538084 0.87 HRH3 (0.50) HRH3KCNH2MGLLHPGDALDH1A1
SCHEMBL3542678 0.86 L3MBTL1 (0.54) HRH3KCNH2HTTHPGDL3MBTL1
SCHEMBL3541059 0.86 HTT (0.54) HRH3KCNH2MGLLHTTHPGD
SCHEMBL3537316 0.86 HRH3 (0.43) HRH3HPGDEGLN1L3MBTL1L3MBTL3

Similarity is cosine over the 2,048-bit Morgan fingerprint (≈ Tanimoto). Identical fingerprints score 1.00.

Patent provenance — the patents this molecule appears in, and who filed them

Claimed or disclosed in 7 patents. claimed = in the patent's claims; disclosed = body only.

PatentTitleAssigneePublishedPriorityFilingCountryStatus
US-7601711-B2 Such as [5-(4-cyclopentyl-piperazine-1-carbonyl)-1H-indol-2-yl]-morpholin-4-yl-methanone; histamine H3-antagonists HOFFMANN-LA ROCHE INC. (US) 2009-10-13 US claimed
US-7723325-B2 5-amido-indole-2-carboxamide derivatives HOFFMAN-LA ROCHE INC. (US) 2010-05-25 US disclosed
US-20090264418-A1 5-AMIDO-INDOLE-2-CARBOXAMIDE DERIVATIVES NETTEKOVEN MATTHIAS 2009-10-22 US disclosed
US-7601711-B2 Such as [5-(4-cyclopentyl-piperazine-1-carbonyl)-1H-indol-2-yl]-morpholin-4-yl-methanone; histamine H3-antagonists HOFFMANN-LA ROCHE INC. (US) 2009-10-13 US disclosed
EP-2010487-A1 5-AMIDO-2-CARBOXAMIDE INDOLES F. Hoffmann-Roche AG (CH) 2009-01-07 EP disclosed
WO-2007115938-A1 5-AMIDO-2-CARBOXAMIDE INDOLES F. HOFFMANN-LA ROCHE AG (CH) 2007-10-18 WO disclosed
US-20070244125-A1 5-amido-indole-2-carboxamide derivatives F. HOFFMANN-LA ROCHE AG (CH) 2007-10-18 US disclosed

Patent text — is the patent's own abstract consistent with the prediction?

For each of this compound's patents that has machine-readable text (2 of them — usually the abstract, not the full specification), we ask MedCPT which protein the text reads most about, and where the chemistry-predicted target lands among 4885 human targets. A high rank means the patent's own wording is consistent with the prediction — a weak, independent signal, not proof of activity.

PatentTitleText reads most aboutPredicted target · text-rank
US-20090264418-A1 5-AMIDO-INDOLE-2-CARBOXAMIDE DERIVATIVES HRH4, HRH3, CNR2 HRH3 2/4885KCNH2 684/4885MGLL 3528/4885
US-20070244125-A1 5-amido-indole-2-carboxamide derivatives HRH4, HRH3, CNR2 HRH3 2/4885KCNH2 684/4885MGLL 3528/4885

“Text reads most about” is the patent abstract's nearest protein in MedCPT space (background-debiased). Only ~1.4% of patents have machine-readable text, so most compounds won't have this panel.