ABL1 p.Lys879fs
c.2636del · VCV3367569
Uncertain significance
Single submitter
Classification
Uncertain significance
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
Consequence
frameshift
predicted LoF
gnomAD v4.1
Rare
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Consequence | frameshift | predicted loss-of-function in a LoF-intolerant gene |
|---|---|---|
| NMD | escapes | premature termination codon in the last exon (11 of 11) — the truncated protein is likely expressed. PVS1 input, not an applied code |
| Splicing | ||
| SpliceAI | — | not assessed · substitutions only |
| Constraint at this position | ||
| Conservation | phyloP 3.2 | GERP 0.52, phastCons 1 |
Predicted loss-of-function is descriptive, not an applied PVS1 code.
Variant & gene context
- Gene
- ABL1
- Protein
- p.Lys879fs
- Coding
- c.2636del
- MANE Select
- NM_005157
- Type
- Deletion
- Location
- chr9:130884925 (GRCh38)
- Gene constraint
- LOEUF 0.19 · pLI 1.00 (gnomAD)
- Structure
- AlphaFold pLDDT 64.68 · 85 PDB
- Residue 879
- the 'disordered' region; the 'dna-binding' region
Similar variants
- ABL1 c.1679-3del Uncertain significance ★ same type
- ABL1 p.Asp276fs Uncertain significance ★ same type
- ABL1 p.Asp391fs Uncertain significance ★ same type
- ABL1 p.Gln627fs Uncertain significance ★ same type
- ABL1 p.Glu549fs Uncertain significance ★ same type
- ABL1 p.Gly864fs Uncertain significance ★ same type
- ABL1 p.Ile360fs Uncertain significance ★ same type
- ABL1 p.Ile641del Uncertain significance ★ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/abl1-p-lys879fs (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown