ABL1 — 858 ClinVar variants

All ClinVar germline ABL1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 363 flagged for review →

10 Pathogenic · 5 Pathogenic/Likely pathogenic · 10 Likely pathogenic · 35 Conflicting · 103 Benign · 22 Benign/Likely benign · 388 Likely benign · 285 Uncertain significance

Full ABL1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 363

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 2

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 23

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 176

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 176

Predictors split 162

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 162

All ABL1 variants

Pathogenic 10

  • p.Ala337Thr Multiple submitters congenital heart disease ⚠
  • p.Gly463Asp Single submitter congenital heart defects and skeletal malformations syndrome
  • p.Met244Val Single submitter
  • p.Glu236Lys No assertion criteria Leukemia, Philadelphia chromosome-positive, resistant to imatinib
  • p.Glu236Val No assertion criteria Leukemia, Philadelphia chromosome-positive, resistant to imatinib
  • p.Glu255Val No assertion criteria lip and oral cavity carcinoma
  • p.His396Arg No assertion criteria lip and oral cavity carcinoma
  • p.Met351Thr No assertion criteria chronic myeloid leukemia
  • p.Phe311Leu No assertion criteria chronic myeloid leukemia
  • p.Tyr253His No assertion criteria Leukemia, Philadelphia chromosome-positive, resistant to imatinib

Pathogenic/Likely pathogenic 5

  • p.Glu509Lys Multiple submitters congenital heart defects and skeletal malformations syndrome
  • p.Gly254Arg Multiple submitters congenital heart defects and skeletal malformations syndrome
  • p.Tyr226Cys Multiple submitters congenital heart defects and skeletal malformations syndrome
  • p.Val506Ala Multiple submitters microcephaly
  • p.Val506Met Multiple submitters congenital heart defects and skeletal malformations syndrome

Likely pathogenic 10

  • p.Ala433Thr Multiple submitters congenital heart defects and skeletal malformations syndrome
  • p.Pro230Leu Multiple submitters congenital heart defects and skeletal malformations syndrome
  • p.Trp99Arg Multiple submitters congenital heart defects and skeletal malformations syndrome
  • p.Asp363Ala Single submitter congenital heart defects and skeletal malformations syndrome
  • p.Asp504Gly Single submitter congenital heart defects and skeletal malformations syndrome ⚠
  • p.Glu292Val Single submitter congenital heart defects and skeletal malformations syndrome
  • p.Pro784Leu Single submitter congenital heart defects and skeletal malformations syndrome ⚠
  • p.Trp48Ser Single submitter congenital heart defects and skeletal malformations syndrome ⚠
  • p.Tyr342Cys Single submitter ⚠
  • p.Glu98Ter No assertion criteria Moyamoya angiopathy

Conflicting classifications of pathogenicity 35

Benign 103

Benign/Likely benign 22

Likely benign 388

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 285