AGBL5 p.Ser49fs
c.143dup · rs1286076992 · VCV1391360
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Consequence | frameshift | predicted loss-of-function |
|---|---|---|
| NMD | predicted | premature termination codon in exon 2 of 15 |
| Splicing | ||
| SpliceAI | — | not assessed · substitutions only |
| Constraint at this position | ||
| Conservation | phyloP 1.7 | GERP -2.8, phastCons 0.99 |
Predicted loss-of-function is descriptive, not an applied PVS1 code.
Population frequency
No gnomAD frequency available for this variant. This is missing data, not an absence: the variant may or may not be present in gnomAD. Rarity (ACMG PM2) and BA1/BS1 cannot be assessed for it.
Variant & gene context
- Gene
- AGBL5
- Protein
- p.Ser49fs
- Coding
- c.143dup
- MANE Select
- NM_021831
- dbSNP
- rs1286076992
- Type
- Duplication
- Location
- chr2:27053100 (GRCh38)
- Gene constraint
- LOEUF 0.709 · pLI <0.01 (gnomAD)
- Structure
- AlphaFold pLDDT 71.36 · 10 PDB
Similar variants
- AGBL5 c.2090-2dup Uncertain significance ★★ same type
- AGBL5 c.216-14dup Likely benign ★★ same type
- AGBL5 c.552-9dup Benign/Likely benign ★★ same type
- AGBL5 p.Ala428fs Pathogenic ★ same type
- AGBL5 p.Arg549fs Pathogenic ★ same type
- AGBL5 p.Asn625fs Pathogenic ★ same type
- AGBL5 p.His141fs Pathogenic ★ same type
- AGBL5 p.Leu247fs Pathogenic ★ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/agbl5-p-ser49fs (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown