Is AKT2 p.Asp32= (c.96C>T) pathogenic?

AKT2 p.Asp32= (c.96C>T) is classified Likely benign in AKT2 (ClinVar, Single submitter, 1 submitter; last evaluated 2019-06-26). Rare (popmax 0.101%, sas).

How common is AKT2 p.Asp32= (c.96C>T) in the general population?

AKT2 p.Asp32= (c.96C>T) is rare (popmax 0.101%, sas) (gnomAD).

AKT2 p.Asp32=

c.96C>T · rs543943324 · VCV1337240

Likely benign Single submitter

Classification

Likely benign

ClinVar

Review

Single submitter ★☆☆☆

ClinVar · 1 submitter

gnomAD v4.1

Rare

rare (popmax 0.101%, sas)

Computational evidence

Protein change
Missense predictors do not apply to this variant type; conservation carries the signal.
Splicing
SpliceAI	—	not assessed · no allele here is in the release
Constraint at this position
Conservation	phyloP -4.2	GERP -5.3
Overall
CADD	7.673	PHRED · no single calibrated threshold — expert panels disagree

Population frequency

gnomAD v4.1 · exomes + genomes

Grpmax group 0.101% South Asian · 92/91,088 alleles

Filtering AF 0.0843% ClinGen BA1/BS1 input FAF95, joint · FAF99 0.0781%

Overall 0.00781% 126/1,614,192 alleles · rare

Ancestry group	Frequency	1 in
South Asiangrpmax	0.101%	990
Admixed American	0.00333%	30,018
European (non-Finnish)	0.00254%	39,333
East Asian	0.00223%	44,888
Remaining individualsnot grpmax-eligible	0.0016%	62,506

Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.

Variant & gene context

Gene: AKT2
Protein: p.Asp32=
Coding: c.96C>T
MANE Select: NM_001626
dbSNP: rs543943324
Type: single nucleotide variant
Location: chr19:40257005 (GRCh38)
Gene constraint: LOEUF 0.398 · pLI 1.00 · ClinGen HI 0/3 (gnomAD)
Structure: AlphaFold pLDDT 82.79 · 19 PDB
Residue 32: the ph domain

Full AKT2 gene report on Sugi Atlas → Gene function, pathways, protein structure, interactions & more

Similar variants

AKT2 c.709-3C>G Uncertain significance ★★ same type
AKT2 c.960+3G>T Uncertain significance ★★ same type
AKT2 p.Ala214Val Uncertain significance ★★ ⚠ same type
AKT2 p.Arg113Trp Uncertain significance ★★ ⚠ same type
AKT2 p.Arg15His Uncertain significance ★★ ⚠ same type
AKT2 p.Arg253Gln Uncertain significance ★★ ⚠ same type
AKT2 p.Arg347Cys Uncertain significance ★★ ⚠ same type
AKT2 p.Asp399Asn Uncertain significance ★★ ⚠ same type

Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →

Cite Sugi Variant

Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/akt2-p-asp32 (accessed [today's date]).

Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown