Is BBS12 p.Ser36del (c.102ATC[1]) pathogenic?

BBS12 p.Ser36del (c.102ATC[1]) is classified Uncertain significance in BBS12 (ClinVar, Single submitter, 1 submitter; last evaluated 2022-10-25). Absent from gnomAD; Associated with Bardet-Biedl syndrome.

What condition is associated with BBS12 p.Ser36del (c.102ATC[1])?

BBS12 p.Ser36del (c.102ATC[1]) is associated with Bardet-Biedl syndrome (ClinVar).

How common is BBS12 p.Ser36del (c.102ATC[1]) in the general population?

BBS12 p.Ser36del (c.102ATC[1]) is absent from gnomAD (gnomAD).

How is Bardet-Biedl syndrome inherited?

Typically Autosomal recessive, Oligogenic (Orphanet). A genetic counselor can assess individual risk for a family.

BBS12 p.Ser36del

c.102ATC[1] · rs2150735886 · VCV1407777

Uncertain significance Single submitter

Classification

Uncertain significance

ClinVar

Review

Single submitter ★☆☆☆

ClinVar · 1 submitter

gnomAD v4.1

Not reported

no gnomAD frequency available for this variant

Conditions

Bardet-Biedl syndrome

Computational evidence

Protein change
Missense predictors do not apply to this variant type; conservation carries the signal.
Splicing
SpliceAI	—	not assessed · substitutions only
Constraint at this position
Conservation	phyloP 5.9	GERP 0.56, phastCons 1

Population frequency

dbSNP / gnomAD

No gnomAD frequency available for this variant. This is missing data, not an absence: the variant may or may not be present in gnomAD. Rarity (ACMG PM2) and BA1/BS1 cannot be assessed for it.

Variant & gene context

Gene: BBS12
Protein: p.Ser36del
Coding: c.102ATC[1]
MANE Select: NM_152618
dbSNP: rs2150735886
Type: Microsatellite
Location: chr4:122741994 (GRCh38)
Gene constraint: LOEUF 1.419 · pLI <0.01 (gnomAD)
Structure: AlphaFold pLDDT 73.92

Full BBS12 gene report on Sugi Atlas → Gene function, pathways, protein structure, interactions & more

Disease context

Bardet-Biedl syndrome — disease report on Sugi Atlas → Associated genes, phenotypes, clinical trials & treatments

For Bardet-Biedl syndrome (Orphanet):

Inheritance: Autosomal recessive, Oligogenic
Onset: Antenatal, Childhood, Infancy, Neonatal
Prevalence: 1-9 / 100 000 (Specific population)

Similar variants

BBS12 p.Ser36Phe Uncertain significance ★★ ⚠ same residue
BBS12 p.Ser36= Likely benign ★ same residue
BBS12 p.Asp687fs Pathogenic/Likely pathogenic ★★ same condition
BBS12 p.His260fs Pathogenic/Likely pathogenic ★★ same condition
BBS12 p.Pro632fs Pathogenic/Likely pathogenic ★★ same condition
BBS12 p.Ser196_Tyr197insTer Pathogenic/Likely pathogenic ★★ same condition
BBS12 p.Tyr640_Ser641delinsTer Pathogenic/Likely pathogenic ★★ same condition
BBS12 p.Val666del Pathogenic/Likely pathogenic ★★ same condition

Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →

Cite Sugi Variant

Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/bbs12-p-ser36del (accessed [today's date]).

Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown