BBS12 — 849 ClinVar variants

All ClinVar germline BBS12 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 351 flagged for review →

69 Pathogenic · 53 Pathogenic/Likely pathogenic · 56 Likely pathogenic · 33 Conflicting · 14 Benign · 9 Benign/Likely benign · 258 Likely benign · 357 Uncertain significance

Full BBS12 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 351

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 3

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 14

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 241

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 241

Predictors split 93

The independent predictors disagree with each other — read with care.

All BBS12 variants

Pathogenic 69

Pathogenic/Likely pathogenic 53

Likely pathogenic 56

Conflicting classifications of pathogenicity 33

Benign 14

  • c.-10-41A>T Multiple submitters Bardet-Biedl syndrome 12
  • c.-124G>A Multiple submitters Bardet-Biedl syndrome 12
  • c.*248G>A Multiple submitters Bardet-Biedl syndrome 12
  • c.*811C>G Multiple submitters Bardet-Biedl syndrome 12
  • p.Cys470= Multiple submitters Bardet-Biedl syndrome
  • p.Gln17= Multiple submitters Bardet-Biedl syndrome
  • p.Gln624= Multiple submitters Bardet-Biedl syndrome
  • p.Gly466= Multiple submitters Bardet-Biedl syndrome
  • p.Ser35= Multiple submitters Bardet-Biedl syndrome
  • p.Ser616Asn Multiple submitters Bardet-Biedl syndrome ⚠
  • p.Val400= Multiple submitters Bardet-Biedl syndrome
  • p.Val403Met Multiple submitters Bardet-Biedl syndrome
  • c.-10-198T>A Single submitter
  • c.*613T>C Single submitter Bardet-Biedl syndrome 12

Benign/Likely benign 9

Likely benign 258

  • p.Ala489= Multiple submitters Bardet-Biedl syndrome
  • p.Asp628= Multiple submitters Bardet-Biedl syndrome
  • p.Asp687= Multiple submitters Bardet-Biedl syndrome
  • p.Glu639= Multiple submitters Bardet-Biedl syndrome
  • p.Thr185= Multiple submitters Bardet-Biedl syndrome 12
  • p.Tyr294= Multiple submitters Bardet-Biedl syndrome 12
  • p.Val441= Multiple submitters Bardet-Biedl syndrome 12
  • c.-61G>C Single submitter Bardet-Biedl syndrome 12
  • c.*38A>G Single submitter
  • p.Ala208= Single submitter Bardet-Biedl syndrome
  • p.Ala23= Single submitter Bardet-Biedl syndrome
  • p.Ala258= Single submitter Bardet-Biedl syndrome
  • p.Ala297= Single submitter Bardet-Biedl syndrome
  • p.Ala4= Single submitter Bardet-Biedl syndrome
  • p.Ala446= Single submitter Bardet-Biedl syndrome
  • p.Ala455= Single submitter Bardet-Biedl syndrome
  • p.Ala510= Single submitter Bardet-Biedl syndrome
  • p.Ala523= Single submitter Bardet-Biedl syndrome
  • p.Ala529= Single submitter Bardet-Biedl syndrome
  • p.Ala541= Single submitter Bardet-Biedl syndrome
  • p.Ala554= Single submitter Bardet-Biedl syndrome
  • p.Ala577= Single submitter Bardet-Biedl syndrome
  • p.Ala615= Single submitter Bardet-Biedl syndrome
  • p.Ala626= Single submitter Bardet-Biedl syndrome
  • p.Ala676= Single submitter Bardet-Biedl syndrome
  • p.Ala76= Single submitter Bardet-Biedl syndrome
  • p.Ala98= Single submitter Bardet-Biedl syndrome
  • p.Arg12= Single submitter Bardet-Biedl syndrome
  • p.Arg192= Single submitter Bardet-Biedl syndrome
  • p.Arg214= Single submitter Bardet-Biedl syndrome
  • p.Arg227= Single submitter Bardet-Biedl syndrome
  • p.Arg239= Single submitter Bardet-Biedl syndrome
  • p.Arg314= Single submitter Bardet-Biedl syndrome
  • p.Arg475= Single submitter Bardet-Biedl syndrome
  • p.Arg487= Single submitter Bardet-Biedl syndrome
  • p.Arg518= Single submitter Bardet-Biedl syndrome
  • p.Arg55= Single submitter Bardet-Biedl syndrome
  • p.Arg6= Single submitter Bardet-Biedl syndrome
  • p.Arg674= Single submitter Bardet-Biedl syndrome
  • p.Asn238= Single submitter Bardet-Biedl syndrome
  • p.Asn266= Single submitter Bardet-Biedl syndrome
  • p.Asn342= Single submitter Bardet-Biedl syndrome
  • p.Asn351= Single submitter Bardet-Biedl syndrome
  • p.Asn366= Single submitter Bardet-Biedl syndrome
  • p.Asn410= Single submitter Bardet-Biedl syndrome
  • p.Asn417= Single submitter Bardet-Biedl syndrome
  • p.Asn438= Single submitter Bardet-Biedl syndrome
  • p.Asn485= Single submitter Bardet-Biedl syndrome
  • p.Asn506= Single submitter Bardet-Biedl syndrome
  • p.Asn593= Single submitter Bardet-Biedl syndrome
  • p.Asn605= Single submitter Bardet-Biedl syndrome
  • p.Asn78= Single submitter Bardet-Biedl syndrome
  • p.Asn79= Single submitter Bardet-Biedl syndrome
  • p.Asp166Gly Single submitter Inborn genetic diseases
  • p.Asp178= Single submitter Bardet-Biedl syndrome
  • p.Asp311= Single submitter Bardet-Biedl syndrome
  • p.Asp463= Single submitter Bardet-Biedl syndrome
  • p.Asp467= Single submitter Bardet-Biedl syndrome
  • p.Asp483= Single submitter Bardet-Biedl syndrome
  • p.Asp664= Single submitter Bardet-Biedl syndrome
  • p.Cys546= Single submitter Bardet-Biedl syndrome
  • p.Cys565= Single submitter Bardet-Biedl syndrome
  • p.Gln18= Single submitter Bardet-Biedl syndrome
  • p.Gln293= Single submitter Bardet-Biedl syndrome
  • p.Gln300= Single submitter Bardet-Biedl syndrome
  • p.Gln556= Single submitter Bardet-Biedl syndrome
  • p.Gln68= Single submitter Bardet-Biedl syndrome
  • p.Gln77= Single submitter Bardet-Biedl syndrome
  • p.Glu171= Single submitter Bardet-Biedl syndrome
  • p.Glu172= Single submitter Bardet-Biedl syndrome
  • p.Glu24= Single submitter Bardet-Biedl syndrome
  • p.Glu325= Single submitter Bardet-Biedl syndrome
  • p.Glu365= Single submitter Bardet-Biedl syndrome
  • p.Glu43= Single submitter Bardet-Biedl syndrome
  • p.Glu462= Single submitter Bardet-Biedl syndrome
  • p.Glu516= Single submitter Bardet-Biedl syndrome
  • p.Glu532= Single submitter Bardet-Biedl syndrome
  • p.Glu671= Single submitter Bardet-Biedl syndrome
  • p.Gly106= Single submitter Bardet-Biedl syndrome
  • p.Gly175= Single submitter Bardet-Biedl syndrome
  • p.Gly251= Single submitter Bardet-Biedl syndrome
  • p.Gly302= Single submitter Bardet-Biedl syndrome
  • p.Gly333= Single submitter Bardet-Biedl syndrome
  • p.Gly361= Single submitter Bardet-Biedl syndrome
  • p.Gly435= Single submitter Bardet-Biedl syndrome
  • p.Gly439= Single submitter Bardet-Biedl syndrome
  • p.Gly538= Single submitter Bardet-Biedl syndrome
  • p.Gly539= Single submitter Bardet-Biedl syndrome
  • p.Gly540= Single submitter Bardet-Biedl syndrome
  • p.Gly67= Single submitter Bardet-Biedl syndrome
  • p.Gly693= Single submitter Bardet-Biedl syndrome
  • p.His13= Single submitter Bardet-Biedl syndrome
  • p.His174= Single submitter Bardet-Biedl syndrome
  • p.His236= Single submitter Bardet-Biedl syndrome
  • p.His255= Single submitter Bardet-Biedl syndrome
  • p.His260= Single submitter Bardet-Biedl syndrome
  • p.His280= Single submitter Bardet-Biedl syndrome
  • p.His369= Single submitter Bardet-Biedl syndrome
  • p.His399= Single submitter Bardet-Biedl syndrome
  • p.His45= Single submitter Bardet-Biedl syndrome
  • p.His551= Single submitter Bardet-Biedl syndrome
  • p.His694= Single submitter Bardet-Biedl syndrome
  • p.Ile335= Single submitter Bardet-Biedl syndrome
  • p.Ile378= Single submitter Bardet-Biedl syndrome
  • p.Ile434= Single submitter Bardet-Biedl syndrome
  • p.Ile488= Single submitter Bardet-Biedl syndrome
  • p.Ile50= Single submitter Bardet-Biedl syndrome
  • p.Ile514= Single submitter Bardet-Biedl syndrome
  • p.Ile619= Single submitter Bardet-Biedl syndrome
  • p.Ile670= Single submitter Bardet-Biedl syndrome
  • p.Ile699= Single submitter Bardet-Biedl syndrome
  • p.Leu150= Single submitter Bardet-Biedl syndrome
  • p.Leu169= Single submitter Bardet-Biedl syndrome
  • p.Leu173= Single submitter Bardet-Biedl syndrome
  • p.Leu184= Single submitter Bardet-Biedl syndrome
  • p.Leu19= Single submitter Bardet-Biedl syndrome
  • p.Leu194Val Single submitter Inborn genetic diseases
  • p.Leu199= Single submitter Bardet-Biedl syndrome
  • p.Leu216= Single submitter Bardet-Biedl syndrome
  • p.Leu220= Single submitter Bardet-Biedl syndrome
  • p.Leu221= Single submitter Bardet-Biedl syndrome
  • p.Leu268= Single submitter Bardet-Biedl syndrome
  • p.Leu285= Single submitter Bardet-Biedl syndrome
  • p.Leu292= Single submitter Bardet-Biedl syndrome
  • p.Leu320= Single submitter Bardet-Biedl syndrome
  • p.Leu33= Single submitter Bardet-Biedl syndrome
  • p.Leu349= Single submitter Bardet-Biedl syndrome
  • p.Leu358= Single submitter Bardet-Biedl syndrome
  • p.Leu363= Single submitter Bardet-Biedl syndrome
  • p.Leu370= Single submitter Bardet-Biedl syndrome
  • p.Leu395= Single submitter Bardet-Biedl syndrome
  • p.Leu411= Single submitter Bardet-Biedl syndrome
  • p.Leu413= Single submitter Bardet-Biedl syndrome
  • p.Leu422= Single submitter Bardet-Biedl syndrome
  • p.Leu49= Single submitter Bardet-Biedl syndrome
  • p.Leu492= Single submitter Bardet-Biedl syndrome
  • p.Leu504= Single submitter Bardet-Biedl syndrome
  • p.Leu530= Single submitter Bardet-Biedl syndrome
  • p.Leu537= Single submitter Bardet-Biedl syndrome
  • p.Leu545= Single submitter Bardet-Biedl syndrome
  • p.Leu588= Single submitter Bardet-Biedl syndrome
  • p.Leu591= Single submitter Bardet-Biedl syndrome
  • p.Leu603= Single submitter Bardet-Biedl syndrome
  • p.Leu656= Single submitter Bardet-Biedl syndrome
  • p.Leu677= Single submitter Bardet-Biedl syndrome
  • p.Leu679= Single submitter Bardet-Biedl syndrome
  • p.Leu682= Single submitter Bardet-Biedl syndrome
  • p.Leu684= Single submitter Bardet-Biedl syndrome
  • p.Lys205= Single submitter Bardet-Biedl syndrome
  • p.Lys284= Single submitter Bardet-Biedl syndrome
  • p.Lys34= Single submitter
  • p.Lys408= Single submitter Bardet-Biedl syndrome
  • p.Lys655= Single submitter Bardet-Biedl syndrome
  • p.Lys669= Single submitter Bardet-Biedl syndrome
  • p.Met442Leu Single submitter Inborn genetic diseases
  • p.Phe122= Single submitter Bardet-Biedl syndrome
  • p.Phe160= Single submitter Bardet-Biedl syndrome
  • p.Phe22= Single submitter Bardet-Biedl syndrome
  • p.Phe252= Single submitter Bardet-Biedl syndrome
  • p.Phe29= Single submitter Bardet-Biedl syndrome
  • p.Phe316= Single submitter Bardet-Biedl syndrome
  • p.Phe536= Single submitter Bardet-Biedl syndrome
  • p.Phe90= Single submitter Bardet-Biedl syndrome
  • p.Pro193= Single submitter Bardet-Biedl syndrome
  • p.Pro32= Single submitter Bardet-Biedl syndrome
  • p.Pro507= Single submitter Bardet-Biedl syndrome
  • p.Pro660= Single submitter Bardet-Biedl syndrome
  • p.Pro668= Single submitter Bardet-Biedl syndrome
  • p.Ser117= Single submitter Bardet-Biedl syndrome
  • p.Ser165= Single submitter Bardet-Biedl syndrome
  • p.Ser196= Single submitter Bardet-Biedl syndrome
  • p.Ser20= Single submitter Bardet-Biedl syndrome
  • p.Ser21= Single submitter Bardet-Biedl syndrome
  • p.Ser213= Single submitter Bardet-Biedl syndrome
  • p.Ser327= Single submitter Bardet-Biedl syndrome
  • p.Ser36= Single submitter Bardet-Biedl syndrome
  • p.Ser384= Single submitter Bardet-Biedl syndrome
  • p.Ser440= Single submitter Bardet-Biedl syndrome
  • p.Ser47= Single submitter Bardet-Biedl syndrome
  • p.Ser476= Single submitter Bardet-Biedl syndrome
  • p.Ser52= Single submitter Bardet-Biedl syndrome
  • p.Ser557= Single submitter Bardet-Biedl syndrome
  • p.Ser566= Single submitter Bardet-Biedl syndrome
  • p.Ser578= Single submitter Bardet-Biedl syndrome
  • p.Ser610= Single submitter Bardet-Biedl syndrome
  • p.Ser629= Single submitter Bardet-Biedl syndrome
  • p.Ser633= Single submitter Bardet-Biedl syndrome
  • p.Ser634= Single submitter Bardet-Biedl syndrome
  • p.Ser645= Single submitter Bardet-Biedl syndrome
  • p.Ser650= Single submitter Bardet-Biedl syndrome
  • p.Ser97= Single submitter Bardet-Biedl syndrome
  • p.Thr146= Single submitter Bardet-Biedl syndrome
  • p.Thr167= Single submitter Bardet-Biedl syndrome
  • p.Thr224= Single submitter Bardet-Biedl syndrome
  • p.Thr240= Single submitter Bardet-Biedl syndrome
  • p.Thr243= Single submitter Bardet-Biedl syndrome
  • p.Thr25= Single submitter Bardet-Biedl syndrome
  • p.Thr257= Single submitter Bardet-Biedl syndrome
  • p.Thr317= Single submitter Bardet-Biedl syndrome
  • p.Thr380= Single submitter Bardet-Biedl syndrome
  • p.Thr494= Single submitter Bardet-Biedl syndrome
  • p.Thr501= Single submitter Bardet-Biedl syndrome
  • p.Thr509= Single submitter Bardet-Biedl syndrome
  • p.Thr521= Single submitter Bardet-Biedl syndrome
  • p.Thr572= Single submitter Bardet-Biedl syndrome
  • p.Thr617= Single submitter Bardet-Biedl syndrome
  • p.Thr63= Single submitter Bardet-Biedl syndrome
  • p.Thr667= Single submitter Bardet-Biedl syndrome
  • p.Thr705= Single submitter Bardet-Biedl syndrome
  • p.Thr80= Single submitter Bardet-Biedl syndrome
  • p.Thr83= Single submitter Bardet-Biedl syndrome
  • p.Tyr197= Single submitter Bardet-Biedl syndrome
  • p.Tyr263= Single submitter Bardet-Biedl syndrome
  • p.Tyr334= Single submitter Bardet-Biedl syndrome
  • p.Tyr367= Single submitter Bardet-Biedl syndrome
  • p.Tyr456= Single submitter Bardet-Biedl syndrome
  • p.Tyr528= Single submitter Bardet-Biedl syndrome
  • p.Tyr604= Single submitter Bardet-Biedl syndrome
  • p.Tyr635= Single submitter Bardet-Biedl syndrome
  • p.Tyr640= Single submitter Bardet-Biedl syndrome
  • p.Tyr663= Single submitter Bardet-Biedl syndrome
  • p.Tyr81= Single submitter Bardet-Biedl syndrome
  • p.Val113= Single submitter Bardet-Biedl syndrome
  • p.Val127= Single submitter Bardet-Biedl syndrome
  • p.Val132= Single submitter Bardet-Biedl syndrome
  • p.Val163= Single submitter Bardet-Biedl syndrome
  • p.Val179= Single submitter Bardet-Biedl syndrome
  • p.Val246Ile Single submitter Inborn genetic diseases
  • p.Val330= Single submitter Bardet-Biedl syndrome
  • p.Val337= Single submitter Bardet-Biedl syndrome
  • p.Val338= Single submitter Bardet-Biedl syndrome
  • p.Val340= Single submitter Bardet-Biedl syndrome
  • p.Val354= Single submitter Bardet-Biedl syndrome
  • p.Val381= Single submitter Bardet-Biedl syndrome
  • p.Val403= Single submitter Bardet-Biedl syndrome
  • p.Val409= Single submitter Bardet-Biedl syndrome
  • p.Val418= Single submitter Bardet-Biedl syndrome
  • p.Val433= Single submitter Bardet-Biedl syndrome
  • p.Val452= Single submitter Bardet-Biedl syndrome
  • p.Val454= Single submitter Bardet-Biedl syndrome
  • p.Val460= Single submitter Bardet-Biedl syndrome
  • p.Val465= Single submitter Bardet-Biedl syndrome
  • p.Val469= Single submitter Bardet-Biedl syndrome
  • p.Val482= Single submitter Bardet-Biedl syndrome
  • p.Val500= Single submitter Bardet-Biedl syndrome
  • p.Val508= Single submitter Bardet-Biedl syndrome
  • p.Val535= Single submitter Bardet-Biedl syndrome
  • p.Val587= Single submitter Bardet-Biedl syndrome
  • p.Val666= Single submitter Bardet-Biedl syndrome
  • p.Val683= Single submitter Bardet-Biedl syndrome
  • p.Val7= Single submitter Bardet-Biedl syndrome
  • p.Val74= Single submitter Bardet-Biedl syndrome
  • c.-7A>T No assertion criteria BBS12-related disorder
  • c.*1T>C No assertion criteria BBS12-related disorder
  • p.Arg584= No assertion criteria BBS12-related disorder
  • p.Ile497= No assertion criteria BBS12-related disorder
  • p.Leu681= No assertion criteria Bardet-Biedl syndrome 12
  • p.Ser234= No assertion criteria BBS12-related disorder

Uncertain significance 357

Showing the top 300 by review status; the full set is in the sitemap.