C7 p.Glu87=
c.261G>A · rs34119061 · VCV1107267
Likely benign
Multiple submitters
Classification
Likely benign
ClinVar
Review
Multiple submitters ★★☆☆
ClinVar · 3 submitters
gnomAD v4.1
Rare
rare (popmax 0.101%, nfe)
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP 0.11 | GERP -4.1, phastCons 0.62 |
| Overall | ||
| CADD | 5.228 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Grpmax group
0.101%
European (non-Finnish) · 1,188/1,179,700 alleles
Filtering AF
0.0959%
ClinGen BA1/BS1 input
FAF95, joint · FAF99 0.094%
Overall
0.0817%
1,318/1,613,624 alleles · rare
| Ancestry group | Frequency | 1 in |
|---|---|---|
| European (non-Finnish)grpmax | 0.101% | 993 |
| Remaining individualsnot grpmax-eligible | 0.0769% | 1,301 |
| Admixed American | 0.045% | 2,222 |
| Finnishnot grpmax-eligible | 0.0281% | 3,556 |
| South Asian | 0.0264% | 3,795 |
| African / African-American | 0.0173% | 5,764 |
Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.
Variant & gene context
- Gene
- C7
- Protein
- p.Glu87=
- Coding
- c.261G>A
- MANE Select
- NM_001565 · reported on NM_000587
- dbSNP
- rs34119061
- Type
- single nucleotide variant
- Location
- chr5:40934447 (GRCh38)
- Structure
- AlphaFold pLDDT 89.67 · 6 PDB
- Residue 87
- an α-helix
Similar variants
- C7 c.281-1G>T Pathogenic/Likely pathogenic ★★ same type
- C7 c.63-1G>A Pathogenic ★★ same type
- C7 c.739-2A>G Likely pathogenic ★★ same type
- C7 p.Arg402Ter Pathogenic/Likely pathogenic ★★ same type
- C7 p.Gln271Ter Pathogenic/Likely pathogenic ★★ same type
- C7 p.Gly379Arg Pathogenic/Likely pathogenic ★★ same type
- C7 p.Trp205Ter Pathogenic/Likely pathogenic ★★ same type
- C7 p.Ala359Thr Uncertain significance ★★ ⚠ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/c7-p-glu87 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown