CTR9 p.Glu1045Ser
c.3133_3135delinsTCA · VCV4976317
Uncertain significance
Single submitter
Classification
Uncertain significance
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
gnomAD v4.1
Rare
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · substitutions only |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP 6.8 | GERP 1.7, phastCons 1 |
| Regional constraint | o/e 0.96 | unconstrained · MANE · 6,491 bp · p 0.47 · regional, not allelic |
Variant & gene context
- Gene
- CTR9
- Protein
- p.Glu1045Ser
- Coding
- c.3133_3135delinsTCA
- MANE Select
- NM_014633
- Type
- Indel
- Location
- chr11:10778716 (GRCh38)
- Gene constraint
- LOEUF 0.368 · pLI 1.00 (gnomAD)
- Structure
- AlphaFold pLDDT 76.62 · 21 PDB
- Residue 1045
- the 'disordered' region
Similar variants
- CTR9 p.Glu1045Lys Uncertain significance ★ ⚠ same residue
- CTR9 p.Glu1045= Likely benign ★ same residue
- CTR9 p.Ala994Phe Uncertain significance ★ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/ctr9-p-glu1045ser (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown