CYLD p.Ser614fs
c.1840_1843del · VCV3652898
Pathogenic
Single submitter
Classification
Pathogenic
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
Consequence
frameshift
predicted LoF
gnomAD v4.1
Rare
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Consequence | frameshift | predicted loss-of-function in a haploinsufficient gene (ClinGen) |
|---|---|---|
| NMD | predicted | premature termination codon in exon 12 of 19 |
| Splicing | ||
| SpliceAI | — | not assessed · substitutions only |
| Constraint at this position | ||
| Conservation | phyloP 6.1 | GERP 2.2, phastCons 1 |
Predicted loss-of-function is descriptive, not an applied PVS1 code.
Variant & gene context
- Gene
- CYLD
- Protein
- p.Ser614fs
- Coding
- c.1840_1843del
- MANE Select
- NM_001378743
- Type
- Deletion
- Location
- chr16:50784340 (GRCh38)
- Gene constraint
- LOEUF 0.325 · pLI 1.00 · ClinGen HI 3/3 (gnomAD)
- Structure
- AlphaFold pLDDT 75.06 · 6 PDB
- Residue 614
- the usp domain; a β-strand
Similar variants
- CYLD p.Asp277fs Pathogenic ★★ same type
- CYLD p.Lys764fs Pathogenic ★★ same type
- CYLD p.Ser371fs Pathogenic/Likely pathogenic ★★ same type
- CYLD p.Thr819_Cys820insTer Pathogenic ★★ same type
- CYLD c.1950-5_1950-2del Uncertain significance ★★ same type
- CYLD c.1950-2_1953del Pathogenic ★ same type
- CYLD c.2215_2241+289del Pathogenic ★ same type
- CYLD p.Asn553fs Pathogenic ★ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/cyld-p-ser614fs (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown