CYLD — 426 ClinVar variants

All ClinVar germline CYLD variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 157 flagged for review →

64 Pathogenic · 2 Pathogenic/Likely pathogenic · 11 Likely pathogenic · 7 Conflicting · 62 Benign · 9 Benign/Likely benign · 51 Likely benign · 220 Uncertain significance

Full CYLD gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 157

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 3

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 110

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 43

The independent predictors disagree with each other — read with care.

All CYLD variants

Pathogenic 64

Pathogenic/Likely pathogenic 2

  • p.Arg936Ter Multiple submitters familial cylindromatosis
  • p.Ser371fs Multiple submitters frontotemporal dementia and/or amyotrophic lateral sclerosis 8

Likely pathogenic 11

Conflicting classifications of pathogenicity 7

  • c.*3148T>C Single submitter familial multiple trichoepithelioma
  • c.*779G>A Single submitter familial multiple trichoepithelioma
  • p.Ile20Ser Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ile391Thr Single submitter familial cylindromatosis ⚠
  • p.Met719Val Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Pro806Leu Single submitter Inborn genetic diseases ⚠
  • p.Tyr715= Single submitter familial multiple trichoepithelioma

Benign 62

Benign/Likely benign 9

  • c.*1575G>A Multiple submitters familial multiple trichoepithelioma
  • c.*1590T>C Multiple submitters Brooke-Spiegler syndrome
  • c.*3736G>A Multiple submitters familial cylindromatosis
  • p.Ala452= Multiple submitters
  • p.Gly431Glu Multiple submitters trichoepithelioma, multiple familial, 1 ⚠
  • p.Ile491= Multiple submitters trichoepithelioma, multiple familial, 1
  • p.Leu773= Multiple submitters familial cylindromatosis
  • p.Pro42= Multiple submitters familial cylindromatosis
  • p.Ser29= Multiple submitters

Likely benign 51

Uncertain significance 220

  • c.1950-5_1950-2del Multiple submitters familial multiple trichoepithelioma
  • c.*3229C>T Multiple submitters Brooke-Spiegler syndrome
  • p.Arg147Cys Multiple submitters frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Arg53His Multiple submitters frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Arg758Gln Multiple submitters ⚠
  • p.Gly593Asp Multiple submitters familial cylindromatosis ⚠
  • p.Ile232Val Multiple submitters frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ile588Thr Multiple submitters frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ile70Val Multiple submitters frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Leu212Ser Multiple submitters frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Leu24Phe Multiple submitters frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Thr311Met Multiple submitters Inborn genetic diseases ⚠
  • p.Thr389Arg Multiple submitters frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Val645Ile Multiple submitters frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • c.1519-9_1519-6del Single submitter
  • c.1684+3A>C Single submitter familial cylindromatosis
  • c.1827-3C>A Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8
  • c.1949+5G>A Single submitter
  • c.2350+4A>G Single submitter
  • c.913+5769A>G Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8
  • c.-124+1988A>G Single submitter Brooke-Spiegler syndrome
  • c.-215C>G Single submitter familial multiple trichoepithelioma
  • c.-229G>C Single submitter Brooke-Spiegler syndrome
  • c.-23A>C Single submitter familial cylindromatosis
  • c.-414T>C Single submitter familial cylindromatosis
  • c.*1033T>A Single submitter familial multiple trichoepithelioma
  • c.*1034C>A Single submitter familial multiple trichoepithelioma
  • c.*1102G>A Single submitter familial multiple trichoepithelioma
  • c.*1191C>G Single submitter familial multiple trichoepithelioma
  • c.*1191C>T Single submitter familial multiple trichoepithelioma
  • c.*1245T>C Single submitter familial multiple trichoepithelioma
  • c.*1308A>G Single submitter familial multiple trichoepithelioma
  • c.*1651G>A Single submitter Brooke-Spiegler syndrome
  • c.*1667G>T Single submitter Brooke-Spiegler syndrome
  • c.*1727T>C Single submitter Brooke-Spiegler syndrome
  • c.*1746C>T Single submitter familial multiple trichoepithelioma
  • c.*1810A>T Single submitter familial multiple trichoepithelioma
  • c.*1983T>C Single submitter familial multiple trichoepithelioma
  • c.*2026G>A Single submitter familial cylindromatosis
  • c.*206A>C Single submitter familial multiple trichoepithelioma
  • c.*2113A>G Single submitter familial cylindromatosis
  • c.*2147T>G Single submitter familial cylindromatosis
  • c.*2305A>T Single submitter familial multiple trichoepithelioma
  • c.*2424C>T Single submitter familial cylindromatosis
  • c.*2438G>A Single submitter familial multiple trichoepithelioma
  • c.*2521G>A Single submitter familial multiple trichoepithelioma
  • c.*2556A>G Single submitter familial multiple trichoepithelioma
  • c.*280A>G Single submitter familial multiple trichoepithelioma
  • c.*2848A>G Single submitter familial multiple trichoepithelioma
  • c.*2856T>C Single submitter familial multiple trichoepithelioma
  • c.*2975C>T Single submitter familial multiple trichoepithelioma
  • c.*29T>C Single submitter familial cylindromatosis
  • c.*3000C>G Single submitter familial multiple trichoepithelioma
  • c.*3151T>G Single submitter familial multiple trichoepithelioma
  • c.*3305A>G Single submitter familial multiple trichoepithelioma
  • c.*3384G>A Single submitter familial multiple trichoepithelioma
  • c.*3462A>G Single submitter familial multiple trichoepithelioma
  • c.*3589C>T Single submitter familial multiple trichoepithelioma
  • c.*3722T>G Single submitter familial cylindromatosis
  • c.*3731C>T Single submitter familial multiple trichoepithelioma
  • c.*3851T>C Single submitter familial cylindromatosis
  • c.*3865C>T Single submitter familial multiple trichoepithelioma
  • c.*403T>C Single submitter familial multiple trichoepithelioma
  • c.*4388C>T Single submitter Brooke-Spiegler syndrome
  • c.*4470C>A Single submitter Brooke-Spiegler syndrome
  • c.*4485G>C Single submitter familial multiple trichoepithelioma
  • c.*4494G>A Single submitter familial multiple trichoepithelioma
  • c.*4514C>G Single submitter familial cylindromatosis
  • c.*4530G>T Single submitter familial cylindromatosis
  • c.*468A>C Single submitter familial multiple trichoepithelioma
  • c.*4691A>G Single submitter familial multiple trichoepithelioma
  • c.*4702C>T Single submitter familial multiple trichoepithelioma
  • c.*4841G>A Single submitter familial multiple trichoepithelioma
  • c.*4885A>T Single submitter familial multiple trichoepithelioma
  • c.*4947G>A Single submitter Brooke-Spiegler syndrome
  • c.*5060G>T Single submitter familial cylindromatosis
  • c.*5327C>A Single submitter familial cylindromatosis
  • c.*5384A>G Single submitter Brooke-Spiegler syndrome
  • c.*59T>C Single submitter familial multiple trichoepithelioma
  • p.Ala102Val Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ala217Thr Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ala339Val Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ala381Ser Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ala381Val Single submitter ⚠
  • p.Ala546Glu Single submitter ⚠
  • p.Ala562Pro Single submitter familial cylindromatosis ⚠
  • p.Ala748Thr Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ala863= Single submitter familial multiple trichoepithelioma
  • p.Ala884Ser Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Arg156Lys Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Arg19Trp Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Arg397His Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Arg53Cys Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Arg59Lys Single submitter ⚠
  • p.Arg929Thr Single submitter Inborn genetic diseases ⚠
  • p.Asn271Lys Single submitter Inborn genetic diseases ⚠
  • p.Asn300Ser Single submitter CYLD-related disorder ⚠
  • p.Asn430Ser Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Asn574Ser Single submitter Inborn genetic diseases ⚠
  • p.Asn628Asp Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Asn68Lys Single submitter Inborn genetic diseases ⚠
  • p.Asn821Ser Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Asn832Ser Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Asp221Glu Single submitter ⚠
  • p.Asp277Asn Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Asp281Asn Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Asp383Tyr Single submitter Inborn genetic diseases ⚠
  • p.Asp394Gly Single submitter Inborn genetic diseases ⚠
  • p.Asp618Val Single submitter ⚠
  • p.Asp681His Single submitter familial cylindromatosis ⚠
  • p.Asp804Asn Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Asp846Glu Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Asp85Val Single submitter ⚠
  • p.Asp882Asn Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Asp882Glu Single submitter Inborn genetic diseases ⚠
  • p.Asp889Tyr Single submitter Inborn genetic diseases ⚠
  • p.Asp893Gly Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Cys129Ser Single submitter Inborn genetic diseases ⚠
  • p.Cys510Tyr Single submitter Inborn genetic diseases ⚠
  • p.Cys513Ser Single submitter Inborn genetic diseases ⚠
  • p.Cys866Arg Single submitter ⚠
  • p.Gln124His Single submitter Inborn genetic diseases ⚠
  • p.Gln174His Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Gln34Lys Single submitter familial cylindromatosis ⚠
  • p.Gln34Pro Single submitter Inborn genetic diseases ⚠
  • p.Gln403Pro Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Gln707Lys Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Gln857Leu Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Gln8His Single submitter ⚠
  • p.Gln948His Single submitter Inborn genetic diseases ⚠
  • p.Glu203Ala Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Glu213Lys Single submitter Inborn genetic diseases ⚠
  • p.Glu226Lys Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Glu308Asp Single submitter ⚠
  • p.Glu569Lys Single submitter Inborn genetic diseases ⚠
  • p.Glu747= Single submitter
  • p.Glu76Asp Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Glu801Val Single submitter ⚠
  • p.Glu860Gln Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Glu911Gly Single submitter Inborn genetic diseases ⚠
  • p.Gly128Ser Single submitter Inborn genetic diseases ⚠
  • p.Gly360Arg Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Gly674Arg Single submitter Inborn genetic diseases ⚠
  • p.Gly852Ser Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.His417Tyr Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.His468Tyr Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.His57Arg Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.His57Asn Single submitter Inborn genetic diseases ⚠
  • p.His833Arg Single submitter ⚠
  • p.Ile161Thr Single submitter Inborn genetic diseases ⚠
  • p.Ile244Val Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ile299Val Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ile391Val Single submitter Inborn genetic diseases ⚠
  • p.Ile650Lys Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ile92Val Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Leu112Gln Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Leu204Pro Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Leu227Pro Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Leu319Arg Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Leu319Phe Single submitter ⚠
  • p.Leu423Phe Single submitter Inborn genetic diseases ⚠
  • p.Leu501= Single submitter familial multiple trichoepithelioma
  • p.Leu640Pro Single submitter ⚠
  • p.Leu781Pro Single submitter Brooke-Spiegler syndrome ⚠
  • p.Leu82Phe Single submitter familial cylindromatosis ⚠
  • p.Lys141Gln Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Lys336Asn Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Lys33Arg Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Lys425Glu Single submitter ⚠
  • p.Lys479Arg Single submitter Inborn genetic diseases ⚠
  • p.Lys479Glu Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Lys578Asn Single submitter ⚠
  • p.Lys64Glu Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Lys724Asn Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Lys812Glu Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Lys95Arg Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Lys95Asn Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Met426Leu Single submitter CYLD-related disorder ⚠
  • p.Met426Thr Single submitter Inborn genetic diseases ⚠
  • p.Met587Thr Single submitter ⚠
  • p.Met719Thr Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Met952Leu Single submitter ⚠
  • p.Phe113Cys Single submitter Inborn genetic diseases ⚠
  • p.Pro14Ser Single submitter Inborn genetic diseases ⚠
  • p.Pro229Ser Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Pro316Ser Single submitter Inborn genetic diseases ⚠
  • p.Pro384Leu Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Pro42Leu Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Pro453Arg Single submitter ⚠
  • p.Pro453Thr Single submitter Inborn genetic diseases ⚠
  • p.Pro749Leu Single submitter Inborn genetic diseases ⚠
  • p.Pro828Ser Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ser214Gly Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ser398Ala Single submitter ⚠
  • p.Ser432Arg Single submitter Brooke-Spiegler syndrome ⚠
  • p.Ser444Cys Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ser809Leu Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Ser839Leu Single submitter Inborn genetic diseases ⚠
  • p.Thr222Lys Single submitter familial cylindromatosis ⚠
  • p.Thr243Ala Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Thr340Ala Single submitter ⚠
  • p.Thr343Ala Single submitter familial cylindromatosis ⚠
  • p.Thr374Ile Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Thr424Asn Single submitter familial cylindromatosis ⚠
  • p.Thr575Ile Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Thr822Ile Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Tyr181= Single submitter familial cylindromatosis
  • p.Tyr797Phe Single submitter ⚠
  • p.Val197Leu Single submitter Inborn genetic diseases ⚠
  • p.Val254Gly Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Val363Leu Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Val478Ala Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Val81Ile Single submitter Inborn genetic diseases ⚠
  • p.Val81Phe Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Val838Leu Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • p.Val838Met Single submitter frontotemporal dementia and/or amyotrophic lateral sclerosis 8 ⚠
  • c.505-8A>G No assertion criteria
  • p.Ala502Thr No assertion criteria ⚠
  • p.Glu242Gly No assertion criteria CYLD-related disorder ⚠
  • p.Leu662Pro No assertion criteria CYLD-related disorder ⚠