DNAJB2 p.Asp211=
c.633C>T · VCV3346213
Likely benign
No assertion criteria
Classification
Likely benign
ClinVar
Review
No assertion criteria ☆☆☆☆
ClinVar · 1 submitter
gnomAD v4.1
Rare
very rare (popmax 8.59e-05%, nfe)
Conditions
1
DNAJB2-related disorder
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP 2.2 | GERP 2, phastCons 1 |
| Overall | ||
| CADD | 9.958 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Grpmax group
8.59e-05%
European (non-Finnish) · 1/1,163,954 alleles
Overall
6.96e-05%
1/1,437,510 alleles · very rare
Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.
Variant & gene context
- Gene
- DNAJB2
- Protein
- p.Asp211=
- Coding
- c.633C>T
- MANE Select
- NM_006736
- Type
- single nucleotide variant
- Location
- chr2:219284645 (GRCh38)
- Gene constraint
- LOEUF 0.836 · pLI <0.01 (gnomAD)
- Structure
- AlphaFold pLDDT 68.73 · 1 PDB
- Residue 211
- the uim 1 domain
Disease context
DNAJB2-related disorder
Similar variants
- DNAJB2 c.175+1G>C Likely pathogenic ★ same condition
- DNAJB2 p.Arg310His Likely benign ⚠ same condition
- DNAJB2 c.175+2T>A Pathogenic/Likely pathogenic ★★ same type
- DNAJB2 c.352+1G>A Pathogenic ★★ same type
- DNAJB2 c.65+1G>A Likely pathogenic ★★ same type
- DNAJB2 p.Arg104Gln Uncertain significance ★★ ⚠ same type
- DNAJB2 p.Arg165Cys Uncertain significance ★★ ⚠ same type
- DNAJB2 p.Arg178His Uncertain significance ★★ ⚠ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/dnajb2-p-asp211 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown