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ERG p.Thr224fs

c.671_672del · rs2517041339 · VCV2637894

Pathogenic No assertion criteria
Classification
Pathogenic
ClinVar
Review
No assertion criteria ☆☆☆☆
ClinVar · 1 submitter
Consequence
frameshift
predicted LoF
gnomAD v4.1
Not reported
no gnomAD frequency available for this variant
Conditions
1
lymphatic malformation 14

Computational evidence

Protein change
Missense predictors do not apply to this variant type; conservation carries the signal.
Consequenceframeshiftpredicted loss-of-function in a LoF-intolerant gene
NMDpredictedpremature termination codon in exon 5 of 10
Splicing
SpliceAI—not assessed · substitutions only
Constraint at this position
ConservationphyloP 7.6GERP 1.9, phastCons 1

Predicted loss-of-function is descriptive, not an applied PVS1 code.

Population frequency

dbSNP / gnomAD

No gnomAD frequency available for this variant. This is missing data, not an absence: the variant may or may not be present in gnomAD. Rarity (ACMG PM2) and BA1/BS1 cannot be assessed for it.

Variant & gene context

Gene
ERG
Protein
p.Thr224fs
Coding
c.671_672del
MANE Select
NM_182918
dbSNP
rs2517041339
Type
Microsatellite
Location
chr21:38402558 (GRCh38)
Gene constraint
LOEUF 0.234 · pLI 1.00 (gnomAD)
Structure
AlphaFold pLDDT 60.25 · 8 PDB
Full ERG gene report on Sugi Atlas → Gene function, pathways, protein structure, interactions & more

Similar variants

Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →

Cite Sugi Variant

Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/erg-p-thr224fs (accessed [today's date]).

Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown