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F8 p.Thr74=

c.222G>A · rs1232517683 · VCV618103

Uncertain significance Expert panel
Classification
Uncertain significance
ClinVar
Review
Expert panel ★★★☆
ClinVar · 6 submitters
gnomAD v4.1
Rare
ultra-rare (popmax 0.0219%, amr)
Conditions
1
hemophilia A

ClinGen expert panel — Coagulation Factor Deficiency VCEP

Uncertain Significance for hemophilia A. Applied ACMG criteria (verbatim):

BS1

Curation rationale (ClinGen, verbatim)

The c.222G>A (p.Thr74=) variant is a synonymous change that may result in abnormal gene splicing. The Grpmax filtering allele frequency in gnomad V4.1.0 is 0.0001184 (BS1). This variant has been reported in at least nine males with mild hemophilia A (PMIDs: 35770352, 35743412, 30690819; Fernández-Artazcoz (2024), and Internal Laboratory Data), including at least one patient who underwent comprehensive testing with F8 sequencing and CNV analysis, and at least one patient with type 2N von Willebrand disease excluded by normal 2N binding. Patients have also been reported with reduced factor VIII activity levels >40% (PMIDs: 25652415, Fernández-Artazcoz (2024)), indicating that the variant is associated with a spectrum of factor VIII reduction extending into the low-normal range. Patient mRNA analyses show variable splicing patterns, with some samples containing both full length and exon 2 skipped transcripts, while others predominantly express the wildtype transcript. (PMIDs: 25652415, 34962362, 23088352). This variability is consistent with incomplete or leaky splicing, likely reflecting differences in individual sensitivity to the splice defect. No PS4 or PP4 points have been applied due to the variant meeting BS1. A minigene assay showed normal exon 2 splicing for c.222G>A in HeLa and in Huh7 hepatocyte derived cells (PMID: 30690819). In summary, the clinical significance of this variant is uncertain. ACMG/AMP criteria applied, as specified by the Coagulation Factor Deficiency Variant Curation Expert Panel for F8/F9: BS1.

ClinGen Evidence Repository → · reported verbatim, not re-tallied by Sugi Variant.

Computational evidence

Protein change
Missense predictors do not apply to this variant type; conservation carries the signal.
Splicing
SpliceAI—not assessed · no allele here is in the release
Constraint at this position
ConservationphyloP -7.6GERP -2.9
Overall
CADD2.367PHRED · no single calibrated threshold — expert panels disagree

Population frequency

gnomAD v4.1 · exomes + genomes
Grpmax group 0.0219% Admixed American · 10/45,604 alleles
Filtering AF 0.0118% ClinGen BA1/BS1 input FAF95, joint · FAF99 0.00903%
Overall 0.00141% 17/1,206,490 alleles · ultra-rare
Ancestry group Frequency 1 in
Admixed Americangrpmax 0.0219% 4,560
Remaining individualsnot grpmax-eligible 0.00422% 23,702
East Asian 0.00297% 33,624
African / African-American 0.00175% 56,996
European (non-Finnish) 0.000336% 297,647

Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.

Variant & gene context

Gene
F8
Protein
p.Thr74=
Coding
c.222G>A
MANE Select
NM_000132
dbSNP
rs1232517683
Type
single nucleotide variant
Location
chrX:154999522 (GRCh38)
Structure
AlphaFold pLDDT 61.20 · 29 PDB
Residue 74
a β-strand; the f5/8 type a 1 domain; the plastocyanin-like 1 domain
Full F8 gene report on Sugi Atlas → Gene function, pathways, protein structure, interactions & more

Disease context

hemophilia A — disease report on Sugi Atlas → Associated genes, phenotypes, clinical trials & treatments

For Hemophilia A (Orphanet):

Inheritance
X-linked recessive
Onset
Childhood, Infancy, Neonatal
Prevalence
1-9 / 100 000 (Worldwide)

Similar variants

Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →

Cite Sugi Variant

Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/f8-p-thr74 (accessed [today's date]).

Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown