F8 p.Thr74=
c.222G>A · rs1232517683 · VCV618103
ClinGen expert panel — Coagulation Factor Deficiency VCEP
Uncertain Significance for hemophilia A. Applied ACMG criteria (verbatim):
BS1
Curation rationale (ClinGen, verbatim)
The c.222G>A (p.Thr74=) variant is a synonymous change that may result in abnormal gene splicing. The Grpmax filtering allele frequency in gnomad V4.1.0 is 0.0001184 (BS1). This variant has been reported in at least nine males with mild hemophilia A (PMIDs: 35770352, 35743412, 30690819; Fernández-Artazcoz (2024), and Internal Laboratory Data), including at least one patient who underwent comprehensive testing with F8 sequencing and CNV analysis, and at least one patient with type 2N von Willebrand disease excluded by normal 2N binding. Patients have also been reported with reduced factor VIII activity levels >40% (PMIDs: 25652415, Fernández-Artazcoz (2024)), indicating that the variant is associated with a spectrum of factor VIII reduction extending into the low-normal range. Patient mRNA analyses show variable splicing patterns, with some samples containing both full length and exon 2 skipped transcripts, while others predominantly express the wildtype transcript. (PMIDs: 25652415, 34962362, 23088352). This variability is consistent with incomplete or leaky splicing, likely reflecting differences in individual sensitivity to the splice defect. No PS4 or PP4 points have been applied due to the variant meeting BS1. A minigene assay showed normal exon 2 splicing for c.222G>A in HeLa and in Huh7 hepatocyte derived cells (PMID: 30690819). In summary, the clinical significance of this variant is uncertain. ACMG/AMP criteria applied, as specified by the Coagulation Factor Deficiency Variant Curation Expert Panel for F8/F9: BS1.
ClinGen Evidence Repository → · reported verbatim, not re-tallied by Sugi Variant.
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP -7.6 | GERP -2.9 |
| Overall | ||
| CADD | 2.367 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
| Ancestry group | Frequency | 1 in |
|---|---|---|
| Admixed Americangrpmax | 0.0219% | 4,560 |
| Remaining individualsnot grpmax-eligible | 0.00422% | 23,702 |
| East Asian | 0.00297% | 33,624 |
| African / African-American | 0.00175% | 56,996 |
| European (non-Finnish) | 0.000336% | 297,647 |
Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.
Variant & gene context
- Gene
- F8
- Protein
- p.Thr74=
- Coding
- c.222G>A
- MANE Select
- NM_000132
- dbSNP
- rs1232517683
- Type
- single nucleotide variant
- Location
- chrX:154999522 (GRCh38)
- Structure
- AlphaFold pLDDT 61.20 · 29 PDB
- Residue 74
- a β-strand; the f5/8 type a 1 domain; the plastocyanin-like 1 domain
Disease context
hemophilia A — disease report on Sugi Atlas → Associated genes, phenotypes, clinical trials & treatmentsFor Hemophilia A (Orphanet):
- Inheritance
- X-linked recessive
- Onset
- Childhood, Infancy, Neonatal
- Prevalence
- 1-9 / 100 000 (Worldwide)
Similar variants
- F8 p.Thr74Met Uncertain significance ★ ⚠ same residue
- F8 c.6429+2T>A Pathogenic ★★★ same condition
- F8 p.Ala111Thr Likely pathogenic ★★★ same condition
- F8 p.Ala2220Pro Pathogenic ★★★ same condition
- F8 p.Ala415Asp Likely pathogenic ★★★ same condition
- F8 p.Ala415Val Pathogenic ★★★ ⚠ same condition
- F8 p.Arg1768His Pathogenic ★★★ ⚠ same condition
- F8 p.Arg1800His Pathogenic ★★★ same condition
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/f8-p-thr74 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown