FKRP p.Asp438fs
c.1312del · VCV3649066
Pathogenic
Single submitter
Classification
Pathogenic
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
Consequence
frameshift
predicted LoF
gnomAD v4.1
Rare
Conditions
1
muscular dystrophy-dystroglycanopathy, type A
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Consequence | frameshift | predicted loss-of-function |
|---|---|---|
| NMD | escapes | premature termination codon in the last exon (4 of 4) — the truncated protein is likely expressed. PVS1 input, not an applied code |
| Splicing | ||
| SpliceAI | — | not assessed · substitutions only |
| Constraint at this position | ||
| Conservation | phyloP 11 | GERP 1.3, phastCons 1 |
Predicted loss-of-function is descriptive, not an applied PVS1 code.
Variant & gene context
- Gene
- FKRP
- Protein
- p.Asp438fs
- Coding
- c.1312del
- MANE Select
- NM_024301
- Type
- Deletion
- Location
- chr19:46756761 (GRCh38)
- Gene constraint
- LOEUF 1.543 · pLI <0.01 (gnomAD)
- Structure
- AlphaFold pLDDT 94.08 · 8 PDB
- Residue 438
- a binding site
Disease context
muscular dystrophy-dystroglycanopathy, type A — disease report on Sugi Atlas → Associated genes, phenotypes, clinical trials & treatmentsFor Walker-Warburg syndrome (Orphanet):
- Inheritance
- Autosomal recessive
- Onset
- Antenatal, Infancy, Neonatal
- Prevalence
- <1 / 1 000 000 (United Kingdom)
Similar variants
- FKRP p.Asp438= Likely benign ★ same residue
- FKRP p.Ala150fs Pathogenic ★★ same condition
- FKRP p.Ala381fs Pathogenic ★★ same condition
- FKRP p.Arg229fs Pathogenic/Likely pathogenic ★★ same condition
- FKRP p.Arg423fs Pathogenic/Likely pathogenic ★★ same condition
- FKRP p.Gly219fs Pathogenic ★★ same condition
- FKRP p.Leu171fs Pathogenic/Likely pathogenic ★★ same condition
- FKRP p.Leu238fs Pathogenic/Likely pathogenic ★★ same condition
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/fkrp-p-asp438fs (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown