AIPL1 — 572 ClinVar variants

All ClinVar germline AIPL1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 188 flagged for review →

47 Pathogenic · 4 Pathogenic/Likely pathogenic · 27 Likely pathogenic · 27 Conflicting · 37 Benign · 11 Benign/Likely benign · 179 Likely benign · 240 Uncertain significance

Full AIPL1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 188

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 2

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 6

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 84

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 96

The independent predictors disagree with each other — read with care.

All AIPL1 variants

Pathogenic 47

  • c.276+1G>A Expert panel AIPL1-related retinopathy
  • c.277-2A>G Expert panel AIPL1-related retinopathy
  • p.Ala197Pro Expert panel AIPL1-related retinopathy
  • p.Arg270His Expert panel AIPL1-related retinopathy
  • p.Cys207fs Expert panel AIPL1-related retinopathy
  • p.Cys42Ter Expert panel AIPL1-related retinopathy
  • p.Cys89Arg Expert panel AIPL1-related retinopathy
  • p.Gln141Ter Expert panel AIPL1-related retinopathy
  • p.Gln163Ter Expert panel AIPL1-related retinopathy
  • p.Glu337fs Expert panel AIPL1-related retinopathy
  • p.Gly262Ser Expert panel AIPL1-related retinopathy ⚠
  • p.Trp278Ter Expert panel AIPL1-related retinopathy
  • p.Trp72Ter Expert panel AIPL1-related retinopathy
  • p.Lys200fs Multiple submitters Leber congenital amaurosis 4
  • c.466-24_466-21del Single submitter Leber congenital amaurosis 4
  • c.643-2A>T Single submitter Leber congenital amaurosis 4
  • p.Arg258Pro Single submitter Leber congenital amaurosis 4
  • p.Arg302fs Single submitter Leber congenital amaurosis 4
  • p.Arg32Ter Single submitter Leber congenital amaurosis 4
  • p.Asn171fs Single submitter Leber congenital amaurosis 4
  • p.Cys207Ter Single submitter Leber congenital amaurosis 4
  • p.Cys89Ter Single submitter Leber congenital amaurosis 4
  • p.Gln109Ter Single submitter Leber congenital amaurosis 4
  • p.Gln163fs Single submitter Leber congenital amaurosis 4
  • p.Glu152Ter Single submitter Leber congenital amaurosis 4
  • p.Glu276Ter Single submitter Leber congenital amaurosis 4
  • p.Glu318fs Single submitter Leber congenital amaurosis 4
  • p.Gly183Ter Single submitter Leber congenital amaurosis 4
  • p.Gly20fs Single submitter Leber congenital amaurosis 4
  • p.Gly30Ter Single submitter Leber congenital amaurosis 4
  • p.His260fs Single submitter Leber congenital amaurosis 4
  • p.His60fs Single submitter Leber congenital amaurosis 4
  • p.Leu191Pro Single submitter Leber congenital amaurosis 4
  • p.Met1Thr Single submitter Leber congenital amaurosis 4
  • p.Met1Val Single submitter Leber congenital amaurosis 4
  • p.Phe35delinsLeuTer Single submitter Leber congenital amaurosis 4
  • p.Trp218Ter Single submitter Leber congenital amaurosis
  • p.Tyr194Ter Single submitter Leber congenital amaurosis 4
  • p.Tyr97fs Single submitter Leber congenital amaurosis 4
  • p.Val290fs Single submitter Leber congenital amaurosis 4
  • p.Val48fs Single submitter Leber congenital amaurosis 4
  • c.785-10_786del No assertion criteria Leber congenital amaurosis 4
  • c.96+4A>T No assertion criteria Leber congenital amaurosis 4
  • p.His36fs No assertion criteria Leber congenital amaurosis 4
  • p.Ile34fs No assertion criteria retinitis pigmentosa
  • p.Phe35fs No assertion criteria Leber congenital amaurosis 4
  • p.Trp222Ter No assertion criteria Leber congenital amaurosis 4

Pathogenic/Likely pathogenic 4

  • c.465+1G>A Multiple submitters Leber congenital amaurosis 4
  • p.Arg80Trp Multiple submitters Leber congenital amaurosis 4 ⚠
  • p.Gln155His Multiple submitters Leber congenital amaurosis 4 ⚠
  • p.Ile99fs Multiple submitters retinitis pigmentosa

Likely pathogenic 27

  • p.Asp51Gly Expert panel AIPL1-related retinopathy
  • p.Cys239Arg Expert panel AIPL1-related retinopathy
  • p.Gly122Arg Expert panel AIPL1-related retinopathy
  • p.Gly64Arg Expert panel AIPL1-related retinopathy
  • p.Leu17Pro Expert panel AIPL1-related retinopathy
  • p.Lys243del Expert panel AIPL1-related retinopathy
  • p.Trp72Arg Expert panel AIPL1-related retinopathy
  • p.Val12fs Expert panel AIPL1-related retinopathy
  • p.Val71Phe Expert panel AIPL1-related retinopathy
  • p.Tyr201Asn Multiple submitters Leber congenital amaurosis 4
  • c.466-1G>C Single submitter Leber congenital amaurosis 4
  • c.785-1G>C Single submitter Abnormality of the eye
  • c.97-10C>A Single submitter
  • c.97-1G>A Single submitter Leber congenital amaurosis 4
  • p.Ala85Asp Single submitter Leber congenital amaurosis 4
  • p.Arg272fs Single submitter Leber congenital amaurosis 4
  • p.Arg311fs Single submitter retinitis pigmentosa
  • p.Gln329Ter Single submitter Leber congenital amaurosis
  • p.Lys14Glu Single submitter Leber congenital amaurosis 4
  • p.Ser101Pro Single submitter Leber congenital amaurosis
  • p.Thr332fs Single submitter Leber congenital amaurosis 4
  • p.Tyr246Ter Single submitter inherited retinal dystrophy
  • c.276+5G>C No assertion criteria inherited retinal dystrophy
  • c.784+2T>A No assertion criteria Leber congenital amaurosis 4
  • c.(?_-1 No assertion criteria Leber congenital amaurosis
  • p.Leu291fs No assertion criteria inherited retinal dystrophy
  • p.Trp222Arg No assertion criteria inherited retinal dystrophy

Conflicting classifications of pathogenicity 27

  • c.642+14G>A Single submitter Leber congenital amaurosis 4
  • c.785-11G>A Single submitter retinitis pigmentosa
  • c.97-15C>T Single submitter Leber congenital amaurosis 4
  • c.97-9G>A Single submitter Leber congenital amaurosis 4
  • c.-17C>A Single submitter Leber congenital amaurosis 4
  • p.Ala352_Pro355del Single submitter inherited retinal dystrophy
  • p.Ala364Thr Single submitter Inborn genetic diseases ⚠
  • p.Arg209= Single submitter Leber congenital amaurosis 4
  • p.Arg302Leu Single submitter Leber congenital amaurosis 4 ⚠
  • p.Asp138= Single submitter retinitis pigmentosa
  • p.Asp255= Single submitter Leber congenital amaurosis 4
  • p.Cys89= Single submitter Leber congenital amaurosis 4
  • p.Gln106= Single submitter Leber congenital amaurosis 4
  • p.Glu215= Single submitter Leber congenital amaurosis 4
  • p.Gly11= Single submitter Leber congenital amaurosis 4
  • p.His172= Single submitter retinitis pigmentosa
  • p.His260= Single submitter Leber congenital amaurosis 4
  • p.His82Tyr Single submitter inherited retinal dystrophy ⚠
  • p.Ile151= Single submitter Leber congenital amaurosis 4
  • p.Ile206Val Single submitter Leber congenital amaurosis 4 ⚠
  • p.Ile74Thr Single submitter Inborn genetic diseases ⚠
  • p.Met126Lys Single submitter retinitis pigmentosa ⚠
  • p.Pro370Ser Single submitter retinitis pigmentosa ⚠
  • p.Ser78= Single submitter retinitis pigmentosa
  • p.Thr47Arg Single submitter Leber congenital amaurosis 4 ⚠
  • p.Tyr246Ser Single submitter retinitis pigmentosa ⚠
  • p.Val33Ala Single submitter Leber congenital amaurosis 4 ⚠

Benign 37

Benign/Likely benign 11

  • c.277-10A>C Multiple submitters retinitis pigmentosa
  • c.277-14G>A Multiple submitters retinitis pigmentosa
  • c.*1009A>G Multiple submitters retinitis pigmentosa
  • c.*1018G>A Multiple submitters retinitis pigmentosa
  • c.*1202C>T Multiple submitters retinitis pigmentosa
  • c.*1229C>T Multiple submitters retinitis pigmentosa
  • c.*1391C>T Multiple submitters retinitis pigmentosa
  • c.*1658T>C Multiple submitters retinitis pigmentosa
  • c.*606G>A Multiple submitters retinitis pigmentosa
  • c.*753G>A Multiple submitters retinitis pigmentosa
  • p.Leu100= Multiple submitters retinitis pigmentosa

Likely benign 179

  • p.Ala285Thr Expert panel AIPL1-related retinopathy ⚠
  • p.His252= Expert panel AIPL1-related retinopathy
  • p.Leu17= Expert panel AIPL1-related retinopathy
  • c.465+45A>G Multiple submitters
  • c.*1289G>A Multiple submitters Leber congenital amaurosis 4
  • c.*1568G>A Multiple submitters Leber congenital amaurosis 4
  • c.*33A>C Multiple submitters Leber congenital amaurosis 4
  • p.Glu135Lys Multiple submitters Leber congenital amaurosis 4 ⚠
  • p.Leu257= Multiple submitters Leber congenital amaurosis 4
  • p.Val220= Multiple submitters Leber congenital amaurosis 4
  • c.276+10C>A Single submitter Leber congenital amaurosis 4
  • c.276+12C>G Single submitter Leber congenital amaurosis 4
  • c.276+12del Single submitter Leber congenital amaurosis 4
  • c.276+14G>T Single submitter Leber congenital amaurosis 4
  • c.276+15C>A Single submitter Leber congenital amaurosis 4
  • c.276+15C>T Single submitter Leber congenital amaurosis 4
  • c.276+16_276+17delinsTT Single submitter Leber congenital amaurosis 4
  • c.276+16G>A Single submitter Leber congenital amaurosis 4
  • c.276+17C>T Single submitter Leber congenital amaurosis 4
  • c.276+18G>A Single submitter Leber congenital amaurosis 4
  • c.276+7dup Single submitter Leber congenital amaurosis 4
  • c.277-14G>T Single submitter Leber congenital amaurosis 4
  • c.277-15C>T Single submitter Leber congenital amaurosis 4
  • c.277-16C>T Single submitter Leber congenital amaurosis 4
  • c.277-19C>T Single submitter Leber congenital amaurosis 4
  • c.277-6C>T Single submitter Leber congenital amaurosis 4
  • c.277-8C>T Single submitter Leber congenital amaurosis 4
  • c.465+11G>C Single submitter Leber congenital amaurosis 4
  • c.465+13T>A Single submitter Leber congenital amaurosis 4
  • c.465+16G>T Single submitter Leber congenital amaurosis 4
  • c.465+19G>A Single submitter Leber congenital amaurosis 4
  • c.465+19G>T Single submitter Leber congenital amaurosis 4
  • c.465+20G>C Single submitter Leber congenital amaurosis 4
  • c.465+20G>T Single submitter Leber congenital amaurosis 4
  • c.465+9G>C Single submitter Leber congenital amaurosis 4
  • c.466-10C>T Single submitter Leber congenital amaurosis 4
  • c.466-20_466-16del Single submitter Leber congenital amaurosis 4
  • c.642+10C>T Single submitter Leber congenital amaurosis 4
  • c.642+11G>T Single submitter Leber congenital amaurosis 4
  • c.642+19G>A Single submitter Leber congenital amaurosis 4
  • c.642+20G>C Single submitter Leber congenital amaurosis 4
  • c.642+8G>A Single submitter Leber congenital amaurosis 4
  • c.642+8G>T Single submitter Leber congenital amaurosis 4
  • c.643-10C>A Single submitter Leber congenital amaurosis 4
  • c.643-16C>G Single submitter Leber congenital amaurosis 4
  • c.643-16C>T Single submitter Leber congenital amaurosis 4
  • c.643-18G>A Single submitter Leber congenital amaurosis 4
  • c.643-4G>A Single submitter Leber congenital amaurosis 4
  • c.643-5G>A Single submitter Leber congenital amaurosis 4
  • c.643-7T>C Single submitter Leber congenital amaurosis 4
  • c.643-9C>T Single submitter Leber congenital amaurosis 4
  • c.784+10G>C Single submitter Leber congenital amaurosis 4
  • c.784+13G>A Single submitter Leber congenital amaurosis 4
  • c.784+17G>A Single submitter Leber congenital amaurosis 4
  • c.784+20C>A Single submitter Leber congenital amaurosis 4
  • c.784+20C>T Single submitter Leber congenital amaurosis 4
  • c.784+7G>A Single submitter Leber congenital amaurosis 4
  • c.784+7G>C Single submitter Leber congenital amaurosis 4
  • c.785-12T>C Single submitter Leber congenital amaurosis 4
  • c.785-14C>T Single submitter Leber congenital amaurosis 4
  • c.785-4A>G Single submitter Leber congenital amaurosis 4
  • c.785-97G>A Single submitter
  • c.96+10G>A Single submitter Leber congenital amaurosis 4
  • c.96+10G>T Single submitter Leber congenital amaurosis 4
  • c.96+13C>A Single submitter Leber congenital amaurosis 4
  • c.96+15T>A Single submitter Leber congenital amaurosis 4
  • c.96+17C>A Single submitter Leber congenital amaurosis 4
  • c.97-10C>T Single submitter Leber congenital amaurosis 4
  • c.97-14G>A Single submitter Leber congenital amaurosis 4
  • c.97-18C>T Single submitter Leber congenital amaurosis 4
  • p.Ala128= Single submitter Leber congenital amaurosis 4
  • p.Ala177= Single submitter Leber congenital amaurosis 4
  • p.Ala177Val Single submitter Inborn genetic diseases
  • p.Ala271= Single submitter Leber congenital amaurosis 4
  • p.Ala273= Single submitter Leber congenital amaurosis 4
  • p.Ala281= Single submitter Leber congenital amaurosis 4
  • p.Ala285= Single submitter Leber congenital amaurosis 4
  • p.Ala3= Single submitter Leber congenital amaurosis 4
  • p.Ala300= Single submitter Leber congenital amaurosis 4
  • p.Ala313= Single submitter Leber congenital amaurosis 4
  • p.Ala360= Single submitter Leber congenital amaurosis 4
  • p.Ala85= Single submitter Leber congenital amaurosis 4
  • p.Arg102= Single submitter Leber congenital amaurosis 4
  • p.Arg187= Single submitter Leber congenital amaurosis 4
  • p.Arg258= Single submitter Leber congenital amaurosis 4
  • p.Arg258Gln Single submitter Leber congenital amaurosis 4
  • p.Arg270= Single submitter Leber congenital amaurosis 4
  • p.Arg324= Single submitter Leber congenital amaurosis 4
  • p.Arg46= Single submitter Leber congenital amaurosis 4
  • p.Arg80= Single submitter Leber congenital amaurosis 4
  • p.Asn26= Single submitter Leber congenital amaurosis 4
  • p.Asp43= Single submitter Leber congenital amaurosis 4
  • p.Asp50= Single submitter Leber congenital amaurosis 4
  • p.Asp90= Single submitter Leber congenital amaurosis 4
  • p.Cys121= Single submitter Leber congenital amaurosis 4
  • p.Cys239= Single submitter Leber congenital amaurosis 4
  • p.Cys323= Single submitter Leber congenital amaurosis 4
  • p.Gln109= Single submitter Leber congenital amaurosis 4
  • p.Gln221= Single submitter Leber congenital amaurosis 4
  • p.Glu184= Single submitter Leber congenital amaurosis 4
  • p.Glu195= Single submitter Leber congenital amaurosis 4
  • p.Glu219= Single submitter Leber congenital amaurosis 4
  • p.Glu294= Single submitter Leber congenital amaurosis 4
  • p.Glu318= Single submitter Leber congenital amaurosis 4
  • p.Glu349= Single submitter Leber congenital amaurosis 4
  • p.Glu73= Single submitter Leber congenital amaurosis 4
  • p.Gly110= Single submitter Leber congenital amaurosis 4
  • p.Gly365= Single submitter Leber congenital amaurosis 4
  • p.Gly95= Single submitter Leber congenital amaurosis 4
  • p.His117= Single submitter Leber congenital amaurosis 4
  • p.His119= Single submitter Leber congenital amaurosis 4
  • p.His18= Single submitter Leber congenital amaurosis 4
  • p.His182= Single submitter Leber congenital amaurosis 4
  • p.His259= Single submitter Leber congenital amaurosis 4
  • p.His274= Single submitter Leber congenital amaurosis 4
  • p.Ile16= Single submitter Leber congenital amaurosis 4
  • p.Ile233= Single submitter Leber congenital amaurosis 4
  • p.Ile49= Single submitter Leber congenital amaurosis 4
  • p.Ile63= Single submitter Leber congenital amaurosis 4
  • p.Leu140= Single submitter Leber congenital amaurosis 4
  • p.Leu153= Single submitter Leber congenital amaurosis 4
  • p.Leu154= Single submitter Leber congenital amaurosis 4
  • p.Leu169= Single submitter Leber congenital amaurosis 4
  • p.Leu181= Single submitter Leber congenital amaurosis 4
  • p.Leu191= Single submitter
  • p.Leu211= Single submitter Leber congenital amaurosis 4
  • p.Leu223= Single submitter Leber congenital amaurosis 4
  • p.Leu225= Single submitter Leber congenital amaurosis 4
  • p.Leu24= Single submitter Leber congenital amaurosis 4
  • p.Leu240= Single submitter Leber congenital amaurosis 4
  • p.Leu241= Single submitter Leber congenital amaurosis 4
  • p.Leu305= Single submitter Leber congenital amaurosis 4
  • p.Leu321= Single submitter Leber congenital amaurosis 4
  • p.Leu327= Single submitter Leber congenital amaurosis 4
  • p.Leu362= Single submitter Leber congenital amaurosis 4
  • p.Leu382= Single submitter Leber congenital amaurosis 4
  • p.Leu69= Single submitter Leber congenital amaurosis 4
  • p.Leu7= Single submitter Leber congenital amaurosis 4
  • p.Lys111= Single submitter Leber congenital amaurosis 4
  • p.Lys142= Single submitter Leber congenital amaurosis 4
  • p.Lys200= Single submitter Leber congenital amaurosis 4
  • p.Lys243= Single submitter Leber congenital amaurosis 4
  • p.Lys289= Single submitter Leber congenital amaurosis 4
  • p.Phe127= Single submitter Leber congenital amaurosis 4
  • p.Phe189= Single submitter Leber congenital amaurosis 4
  • p.Pro159= Single submitter Leber congenital amaurosis 4
  • p.Pro179= Single submitter Leber congenital amaurosis 4
  • p.Pro217= Single submitter Leber congenital amaurosis 4
  • p.Pro295= Single submitter Leber congenital amaurosis 4
  • p.Pro334= Single submitter Leber congenital amaurosis 4
  • p.Pro335= Single submitter Leber congenital amaurosis 4
  • p.Pro343= Single submitter Leber congenital amaurosis 4
  • p.Pro358= Single submitter Leber congenital amaurosis 4
  • p.Pro376= Single submitter Leber congenital amaurosis 4
  • p.Pro376Leu Single submitter Inborn genetic diseases
  • p.Pro58= Single submitter Leber congenital amaurosis 4
  • p.Pro98= Single submitter Leber congenital amaurosis 4
  • p.Ser170= Single submitter Leber congenital amaurosis 4
  • p.Ser346= Single submitter Leber congenital amaurosis 4
  • p.Ser363= Single submitter Leber congenital amaurosis 4
  • p.Ser381= Single submitter Leber congenital amaurosis 4
  • p.Thr120= Single submitter Leber congenital amaurosis 4
  • p.Thr131= Single submitter Leber congenital amaurosis 4
  • p.Thr166= Single submitter Leber congenital amaurosis 4
  • p.Thr332= Single submitter Leber congenital amaurosis 4
  • p.Thr348= Single submitter Leber congenital amaurosis 4
  • p.Thr372= Single submitter Leber congenital amaurosis 4
  • p.Thr39= Single submitter Leber congenital amaurosis 4
  • p.Thr47= Single submitter Leber congenital amaurosis 4
  • p.Thr91= Single submitter Leber congenital amaurosis 4
  • p.Thr94= Single submitter Leber congenital amaurosis 4
  • p.Tyr134= Single submitter Leber congenital amaurosis 4
  • p.Tyr194= Single submitter Leber congenital amaurosis 4
  • p.Tyr247= Single submitter Leber congenital amaurosis 4
  • p.Tyr268= Single submitter Leber congenital amaurosis 4
  • p.Val180= Single submitter Leber congenital amaurosis 4
  • p.Val269= Single submitter Leber congenital amaurosis 4
  • p.Val48= Single submitter Leber congenital amaurosis 4
  • p.Val96= Single submitter Leber congenital amaurosis 4

Uncertain significance 240